chr12 : 89,087,211 89,088,381
1,170 bp 69 TFs 0 linked genes
This 1.2 kb open chromatin element has no linked target genes and is bound by 69 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:89,082,211 – 89,093,381
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
AR 3 datasets
ChIP VCaP GSE148358.AR.VCaP 146 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 77 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ARNTL 1 dataset
ChIP Hep-G2 ENCSR794LVK.ARNTL.Hep-G2 206 bp overlap
ASH2L 2 datasets
ChIP H1 ENCFF399KAM 641 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 250 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 180 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 139 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 597 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 247 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 490 bp overlap
CTCF 5 datasets
Motif DE_60h DE_60h-CTCF_MA1930.2 33 bp overlap
ChIP DND-41 ENCFF913MRA 317 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 174 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 295 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 126 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 305 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 304 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 130 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 156 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 158 bp overlap
ESR1 12 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 154 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 177 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 204 bp overlap
ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 157 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 282 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 231 bp overlap
ChIP breast_tumor_BADOUTCOME GSE40867.ESR1.breast_tumor_BADOUTCOME 191 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 322 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.ESR1.primary-breast-cancer_B1_DSG 248 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 291 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 308 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 222 bp overlap
FOXA1 64 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 489 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 303 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 273 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 394 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 260 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 200 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 144 bp overlap
ChIP HepG2 ENCFF207NVJ 99 bp overlap
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 400 bp overlap
ChIP LNCaP GSE64656.FOXA1.LNCaP 228 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 130 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 168 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 283 bp overlap
ChIP LNCaP_L388M_shFOXA1 GSE128883.FOXA1.LNCaP_L388M_shFOXA1 194 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 114 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 60 bp overlap
ChIP MCF-7 ENCSR126YEB.FOXA1.MCF-7 216 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 222 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 168 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 291 bp overlap
ChIP MCF-7_1117 GSE124667.FOXA1.MCF-7_1117 174 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 186 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 274 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 243 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 239 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 249 bp overlap
ChIP MCF-7_JC4694 GSE126004.FOXA1.MCF-7_JC4694 204 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 183 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 235 bp overlap
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 219 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 265 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 209 bp overlap
ChIP T-47D GSE72249.FOXA1.T-47D 252 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 220 bp overlap
ChIP T-47D_DEX GSE72249.FOXA1.T-47D_DEX 250 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 327 bp overlap
ChIP T-47D_E2 GSE72249.FOXA1.T-47D_E2 216 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 264 bp overlap
ChIP T-47D_JC4742 GSE126004.FOXA1.T-47D_JC4742 200 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 200 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 309 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 303 bp overlap
ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 411 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 338 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 257 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 211 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 184 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 187 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 333 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 405 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 319 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 379 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 375 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 374 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 375 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 267 bp overlap
ChIP breast_tumor_Male_4 GSE104399.FOXA1.breast_tumor_Male_4 253 bp overlap
ChIP liver ENCFF537QZV 396 bp overlap
ChIP liver ENCSR324RCI.FOXA1.liver 274 bp overlap
ChIP liver ENCSR735KEY.FOXA1.liver 144 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 370 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 345 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 284 bp overlap
FOXA2 14 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 348 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 349 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 221 bp overlap
ChIP DE DE-FOXA2-1 972 bp overlap
ChIP DE DE-FOXA2-2 740 bp overlap
ChIP HepG2 ENCFF533COJ 297 bp overlap
ChIP HepG2 ENCFF570ABM 372 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 305 bp overlap
ChIP liver ENCFF877SFI 345 bp overlap
ChIP liver ENCFF888VJF 345 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 272 bp overlap
ChIP liver ENCSR310NYI.FOXA2.liver 233 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 313 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 396 bp overlap
GATA1 1 dataset
ChIP K-562 GSE107726.GATA1.K-562 184 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 388 bp overlap
GATA4 8 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 439 bp overlap
ChIP DE DE-GATA4-1 738 bp overlap
ChIP DE DE-GATA4-2 1008 bp overlap
ChIP foregut GSE117136.GATA4.foregut 450 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 358 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 440 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 559 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 230 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 792 bp overlap
ChIP DE DE-GATA6-2 340 bp overlap
ChIP DE DE-GATA6-2 671 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 844 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 999 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 927 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 969 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 974 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 974 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 591 bp overlap
ChIP foregut GSE117136.GATA6.foregut 376 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 301 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 283 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 261 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 326 bp overlap
HOXB13 1 dataset
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 169 bp overlap
IRF2 1 dataset
ChIP CD34_ADULT GSE70660.IRF2.CD34_ADULT 164 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 599 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 654 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 250 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 671 bp overlap
KDM1A 2 datasets
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 146 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 331 bp overlap
KLF4 2 datasets
ChIP MCF-7 ENCFF948KTQ 405 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 147 bp overlap
MAX 1 dataset
ChIP liver ENCSR521IID.MAX.liver 210 bp overlap
MGA 1 dataset
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 201 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 221 bp overlap
MYF5 1 dataset
ChIP Rh18 GSE84628.MYF5.Rh18 238 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 121 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 438 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 746 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 117 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 762 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 626 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 773 bp overlap
NIPBL 1 dataset
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 225 bp overlap
NR3C1 1 dataset
ChIP HCC1937 GSE152203.NR3C1.HCC1937 223 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 257 bp overlap
ChIP stomach ENCFF820WZN 191 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 211 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 282 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 354 bp overlap
RAD21 1 dataset
ChIP liver ENCFF522JHE 357 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 82 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 343 bp overlap
SCRT1 1 dataset
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 369 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 288 bp overlap
ChIP HEK293 ENCFF711QQB 521 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 283 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 197 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 488 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 972 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 1044 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 749 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 566 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 716 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 376 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 320 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 148 bp overlap
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 191 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 151 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 300 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 298 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 193 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 188 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 834 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 200 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 230 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 257 bp overlap
SOX2 1 dataset
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
SP1 2 datasets
ChIP WA01 ENCSR000BIR.SP1.WA01 172 bp overlap
ChIP liver ENCFF597LFJ 206 bp overlap
SPDEF 1 dataset
ChIP MCF-7 ENCSR042GSX.SPDEF.MCF-7 187 bp overlap
SPI1 11 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 223 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 358 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 212 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 292 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 214 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 170 bp overlap
ChIP monocyte GSE31621.SPI1.monocyte 132 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 147 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 109 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 120 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 275 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 150 bp overlap
TEAD1 2 datasets
ChIP CCLP1 GSE62272.TEAD1.CCLP1 391 bp overlap
ChIP pancreas_12D ERP008682.TEAD1.pancreas_12D 149 bp overlap
TEAD4 4 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 530 bp overlap
ChIP H1 ENCFF778PAX 140 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 177 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 229 bp overlap
TLE3 1 dataset
ChIP LNCaP GSE94682.TLE3.LNCaP 163 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 216 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 243 bp overlap
ZNF462 3 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 224 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 318 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 343 bp overlap