chr12 : 65,883,008 – 65,883,609
601 bp 61 TFs 1 linked gene
This 601 bp open chromatin element is linked to HMGA2-AS1 and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
HMGA2-AS1 967 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:65,878,008 – 65,888,609
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 224 bp overlap
BRD4 1 dataset
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 241 bp overlap
CEBPD 1 dataset
ChIP HAEC_IL1b_4h GSE89970.CEBPD.HAEC_IL1b_4h 178 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 170 bp overlap
ChIP SCCOHT-1 GSE117734.DPF2.SCCOHT-1 396 bp overlap
EHF 2 datasets
ChIP RWPE-1 GSE114241.EHF.RWPE-1 153 bp overlap
ChIP primary-bronchial-epithelial GSE85401.EHF.primary-bronchial-epithelial 65 bp overlap
ELF1 1 dataset
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 155 bp overlap
ELF3 4 datasets
ChIP HepG2 ENCFF633ULY 243 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 289 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 207 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 337 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 231 bp overlap
EP300 2 datasets
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 141 bp overlap
ChIP HepG2 ENCFF354ACD 229 bp overlap
ERG 2 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 108 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 290 bp overlap
ETV5 1 dataset
ChIP HepG2 ENCFF456LSA 198 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 123 bp overlap
FOXA1 10 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 216 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 57 bp overlap
ChIP HepG2 ENCFF207NVJ 185 bp overlap
ChIP HepG2 ENCFF740VZW 197 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 132 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 181 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 294 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 275 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 273 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 143 bp overlap
FOXA2 4 datasets
ChIP BJ1-hTERT_GATA4 GSE90454.FOXA2.BJ1-hTERT_GATA4 175 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 97 bp overlap
ChIP DE DE-FOXA2-2 201 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 144 bp overlap
FOXK1 1 dataset
ChIP Hep-G2 ENCSR603BJQ.FOXK1.Hep-G2 123 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 136 bp overlap
GABPA 1 dataset
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 105 bp overlap
GATA2 4 datasets
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 231 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 446 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 262 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 159 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 249 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 203 bp overlap
ChIP DE DE-GATA4-1 260 bp overlap
ChIP DE DE-GATA4-2 265 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 209 bp overlap
GATA6 7 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 432 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 542 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 462 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 366 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 566 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 548 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 288 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 296 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 106 bp overlap
HOMEZ 1 dataset
ChIP HepG2 ENCFF800ZQH 350 bp overlap
HSF1 1 dataset
ChIP MO91_CHX_10UM GSE45852.HSF1.MO91_CHX_10UM 182 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 167 bp overlap
JUN 1 dataset
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 151 bp overlap
JUNB 1 dataset
ChIP HAEC GSE89970.JUNB.HAEC 258 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 246 bp overlap
MYC 2 datasets
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 150 bp overlap
ChIP CC-LP-1 GSE124430.MYC.CC-LP-1 353 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 121 bp overlap
PAXIP1 2 datasets
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 196 bp overlap
ChIP HepG2 ENCFF526NOJ 333 bp overlap
PHIP 3 datasets
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 601 bp overlap
ChIP HCT-116_ab834 GSE101646.PHIP.HCT-116_ab834 459 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 511 bp overlap
POLR2A 1 dataset
ChIP HCT116 ENCFF508RDJ 465 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 125 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 230 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 250 bp overlap
RELA 12 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 256 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 212 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 291 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 205 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 269 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 176 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 450 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 286 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 178 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 198 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 149 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 302 bp overlap
REST 1 dataset
ChIP PFSK-1 ENCFF845VHA 185 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 108 bp overlap
SIX2 2 datasets
ChIP HEK GSE73865.SIX2.HEK 234 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 128 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 113 bp overlap
SMARCA4 3 datasets
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 339 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 601 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 137 bp overlap
SMARCC1 3 datasets
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 520 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 222 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 445 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 270 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 181 bp overlap
SPDEF 1 dataset
ChIP A-549 GSE86957.SPDEF.A-549 338 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 240 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 236 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 106 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 63 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 391 bp overlap
TCF7 1 dataset
ChIP Hep-G2 ENCSR444LIN.TCF7.Hep-G2 159 bp overlap
TCF7L2 5 datasets
ChIP Hep-G2 ENCSR346BOD.TCF7L2.Hep-G2 161 bp overlap
ChIP HepG2 ENCFF510OLG 294 bp overlap
ChIP LNCaP GSE51621.TCF7L2.LNCaP 405 bp overlap
ChIP PANC-1 ENCSR000EXL.TCF7L2.PANC-1 423 bp overlap
ChIP Panc1 ENCFF829HHL 238 bp overlap
TFE3 1 dataset
ChIP Hep-G2 ENCSR589SNT.TFE3.Hep-G2 124 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 157 bp overlap
ZEB1 1 dataset
ChIP HEK293 ENCFF007TAP 302 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 71 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 174 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 231 bp overlap
ZSCAN31 1 dataset
ChIP HEK293 GSE76494.ZSCAN31.HEK293 61 bp overlap
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