chr12 : 40,827,846 – 40,828,444
598 bp 73 TFs 0 linked genes
This 598 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:40,822,846 – 40,833,444
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ATF2 3 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
BACH2 3 datasets
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
Motif DE_36h DE_36h-BACH2_MA1470.2 19 bp overlap
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BRD4 2 datasets
ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 179 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 202 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 178 bp overlap
CREB1 5 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 133 bp overlap
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 219 bp overlap
CREM 3 datasets
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Motif DE_36h DE_36h-CREM_MA0609.3 10 bp overlap
Motif ES_0h ES_0h-CREM_MA0609.3 10 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 268 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 479 bp overlap
ChIP neural cell ENCFF442QNK 515 bp overlap
ESR1 2 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 130 bp overlap
ChIP MCF-7_TAMR GSE86538.ESR1.MCF-7_TAMR 108 bp overlap
FOS::JUN 3 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
Motif ES_0h ES_0h-FOSJUN_MA1126.2 10 bp overlap
FOSL2::JUN 3 datasets
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2JUN_MA1131.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUND 3 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_36h DE_36h-FOSL2JUND_MA1145.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA1 3 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 278 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 343 bp overlap
Foxl2 1 dataset
Motif DE_12h DE_12h-Foxl2_MA1607.2 10 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
JUN 5 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 289 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 261 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_36h DE_36h-JUNJUNB_MA1133.2 11 bp overlap
Motif ES_0h ES_0h-JUNJUNB_MA1133.2 11 bp overlap
JUND 3 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
KLF5 1 dataset
ChIP HEK293_E419Q GSE88976.KLF5.HEK293_E419Q 404 bp overlap
KMT2A 1 dataset
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 336 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 341 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 157 bp overlap
ChIP HepG2 ENCFF452YUT 224 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 270 bp overlap
MAFK 4 datasets
ChIP A549 ENCFF371EPR 238 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 212 bp overlap
ChIP HepG2 ENCFF743ZOF 201 bp overlap
ChIP HepG2 ENCFF767LDG 217 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 420 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 173 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 339 bp overlap
NR2C1 3 datasets
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 3 datasets
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 3 datasets
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 3 datasets
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 102 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 259 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 248 bp overlap
PHIP 2 datasets
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 263 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 137 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 168 bp overlap
POU2F1 4 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 165 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 164 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 321 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 236 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 144 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 163 bp overlap
POU3F2 2 datasets
ChIP hiPSC GSE149017.POU3F2.hiPSC 119 bp overlap
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 101 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 233 bp overlap
POU5F1 5 datasets
ChIP BG03 GSE21614.POU5F1.BG03 137 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 324 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 96 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 209 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 180 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 97 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 556 bp overlap
ChIP neural cell ENCFF564MOT 466 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 232 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 161 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 224 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 209 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 598 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 282 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 224 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 105 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 193 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 228 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 195 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 208 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 314 bp overlap
SP2 1 dataset
ChIP K-562 ENCSR000BNL.SP2.K-562 118 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TCF7L1 3 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif DE_36h DE_36h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
ZBTB44 1 dataset
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 212 bp overlap
ZBTB6 1 dataset
Motif DE_12h DE_12h-ZBTB6_MA1581.2 9 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 260 bp overlap
ZIM3 3 datasets
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
Motif DE_36h DE_36h-ZIM3_MA1709.2 11 bp overlap
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 293 bp overlap
ZNF317 3 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 561 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 598 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 265 bp overlap
ZNF418 3 datasets
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
Motif DE_36h DE_36h-ZNF418_MA1980.1 15 bp overlap
Motif ES_0h ES_0h-ZNF418_MA1980.1 15 bp overlap
ZNF610 2 datasets
Motif DE_12h DE_12h-ZNF610_MA1713.2 10 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 269 bp overlap
ZNF611 1 dataset
ChIP HEK293T GSE78099.ZNF611.HEK293T 282 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 480 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 253 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 262 bp overlap
ZNF708 2 datasets
Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap
ChIP HEK293T GSE78099.ZNF708.HEK293T 175 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 169 bp overlap
ZSCAN29 1 dataset
Motif DE_12h DE_12h-ZSCAN29_MA1602.2 11 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap
Zic2 3 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
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