chr11 : 128,518,610 128,519,374
764 bp 58 TFs 2 linked genes
This 764 bp open chromatin element is linked to MIR6090 and ETS1-AS1 and is bound by 58 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MIR6090 3.0 kb Proximal Proximity
ETS1-AS1 6.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:128,513,610 – 128,524,374
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
58 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 423 bp overlap
ChIP CD4_Th1_DMSO GSE62482.AFF4.CD4_Th1_DMSO 182 bp overlap
AR 8 datasets
ChIP LNCaP ERP001226.AR.LNCaP 182 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 254 bp overlap
ChIP LNCaP_DHT GSE43720.AR.LNCaP_DHT 179 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 165 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 228 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 306 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 241 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 418 bp overlap
ARID2 1 dataset
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 196 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 257 bp overlap
BRD2 3 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 505 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 215 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 155 bp overlap
BRD4 18 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 161 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 203 bp overlap
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 182 bp overlap
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 145 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 472 bp overlap
ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 231 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 139 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 240 bp overlap
ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 291 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 267 bp overlap
ChIP PC-3_GDC-R_SAHA GSE137207.BRD4.PC-3_GDC-R_SAHA 75 bp overlap
ChIP SUM159PT_100nMtrametinib300nMJQ1_24h GSE87418.BRD4.SUM159PT_100nMtrametinib300nMJQ1_24h 301 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 521 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 425 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 213 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 128 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 208 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 556 bp overlap
CEBPB 2 datasets
ChIP A-549 ENCSR000BUB.CEBPB.A-549 136 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 202 bp overlap
CHD1 3 datasets
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 309 bp overlap
ChIP IMR-90 ENCSR000EFC.CHD1.IMR-90 150 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 166 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 165 bp overlap
EP300 1 dataset
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 139 bp overlap
ETS1 2 datasets
ChIP HEY-A8 GSE101832.ETS1.HEY-A8 220 bp overlap
ChIP OVCAR-8 GSE101832.ETS1.OVCAR-8 168 bp overlap
FEZF1 2 datasets
ChIP HEK293 ENCFF528YED 441 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 298 bp overlap
FOXA1 4 datasets
ChIP LNCaP GSE64656.FOXA1.LNCaP 221 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 408 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap
ChIP LNCaP_TFS GSE123618.FOXA1.LNCaP_TFS 253 bp overlap
FOXA2 5 datasets
ChIP DE DE-FOXA2-1 326 bp overlap
ChIP DE DE-FOXA2-2 412 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 239 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 440 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 651 bp overlap
GATA2 3 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 151 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 151 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 99 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 386 bp overlap
ChIP DE DE-GATA4-2 464 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 281 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 80 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 408 bp overlap
ChIP DE DE-GATA6-2 544 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 606 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 464 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 652 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 690 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 320 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 276 bp overlap
HNF1B 3 datasets
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 512 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 379 bp overlap
ChIP PDAC GSE64557.HNF1B.PDAC 145 bp overlap
HOXB8 1 dataset
ChIP PANC-1 GSE119930.HOXB8.PANC-1 631 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 201 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 143 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 289 bp overlap
JUN 1 dataset
ChIP T-cell GSE136853.JUN.T-cell 89 bp overlap
KDM1A 6 datasets
ChIP A-549 ENCSR639GWS.KDM1A.A-549 73 bp overlap
ChIP A549 ENCFF633QSB 195 bp overlap
ChIP OCI-Ly1 GSE107920.KDM1A.OCI-Ly1 57 bp overlap
ChIP OCI-Ly1_si GSE107920.KDM1A.OCI-Ly1_si 56 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 148 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 152 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 134 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 131 bp overlap
MED1 5 datasets
ChIP GM12878 GSE93080.MED1.GM12878 133 bp overlap
ChIP GM12878 GSE93080.MED1.GM12878 65 bp overlap
ChIP RH4 GSE83726.MED1.RH4 219 bp overlap
ChIP U-87MG GSE36354.MED1.U-87MG 135 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 231 bp overlap
MLLT1 1 dataset
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 376 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 257 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 273 bp overlap
OSR2 1 dataset
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 315 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 400 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 597 bp overlap
POLR2A 9 datasets
ChIP GM12878 ENCFF521FXC 342 bp overlap
ChIP GM12891 ENCFF012SUT 55 bp overlap
ChIP GM12892 ENCFF542ZFO 370 bp overlap
ChIP GM12892 ENCFF542ZFO 67 bp overlap
ChIP IMR-90 ENCFF672YWV 459 bp overlap
ChIP PFSK-1 ENCFF576NIT 186 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 391 bp overlap
ChIP spleen ENCFF044PYR 285 bp overlap
ChIP spleen ENCFF955VIQ 285 bp overlap
RAD21 2 datasets
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 152 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 199 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 87 bp overlap
REST 2 datasets
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 115 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 137 bp overlap
SIN3A 3 datasets
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 220 bp overlap
ChIP PFSK1 ENCSR000BOY.SIN3A.PFSK1 112 bp overlap
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 134 bp overlap
SMC3 1 dataset
ChIP IMR-90 ENCSR000HPG.SMC3.IMR-90 283 bp overlap
SS18 1 dataset
ChIP SYO-1 GSE108025.SS18.SYO-1 312 bp overlap
SUPT5H 3 datasets
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 73 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 123 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 132 bp overlap
TAF1 1 dataset
ChIP PFSK-1 ENCFF982LZL 375 bp overlap
TBX21 1 dataset
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 137 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 153 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 126 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 248 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 235 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 155 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 360 bp overlap
XBP1 1 dataset
ChIP LNCaP_Tg GSE121880.XBP1.LNCaP_Tg 217 bp overlap
ZFP36 3 datasets
ChIP A549 ENCFF505LUC 61 bp overlap
ChIP GM12878 ENCFF234WRG 88 bp overlap
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 86 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 471 bp overlap
ZMYM3 4 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 89 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 138 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 158 bp overlap
ChIP K562 ENCFF361LXT 220 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 220 bp overlap
ZNF549 1 dataset
ChIP HEK293 GSE76494.ZNF549.HEK293 183 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 421 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 290 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 246 bp overlap