chr11 : 16,611,809 16,612,213
404 bp 55 TFs 1 linked gene
This 404 bp open chromatin element is linked to SOX6 and is bound by 55 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SOX6 5.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr11:16,606,809 – 16,617,213
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
55 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 383 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 233 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD3.K-562_iBET-BD2-IFNG 168 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 271 bp overlap
CBX7 5 datasets
ChIP HEK293T_PCGF2fl GSE119618.CBX7.HEK293T_PCGF2fl 396 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.CBX7.HEK293T_PCGF2fl_OHT 191 bp overlap
ChIP hESC GSE133412.CBX7.hESC 369 bp overlap
ChIP hESC_QKO GSE133412.CBX7.hESC_QKO 252 bp overlap
ChIP hESC_TKO GSE133412.CBX7.hESC_TKO 378 bp overlap
CBX8 1 dataset
ChIP A-549 ENCSR616MOB.CBX8.A-549 313 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 56 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 169 bp overlap
CTCF 3 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 252 bp overlap
ChIP A673 ENCFF123WOM 354 bp overlap
ChIP A673 ENCFF123WOM 282 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 157 bp overlap
ELF1 1 dataset
ChIP A-549 GSE122203.ELF1.A-549 119 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 312 bp overlap
ChIP tibial nerve ENCFF346AYA 137 bp overlap
EZH2 25 datasets
ChIP B cell ENCFF803EMO 83 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 281 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 404 bp overlap
ChIP GM23248 ENCFF404ZHM 150 bp overlap
ChIP GM23248 ENCFF404ZHM 350 bp overlap
ChIP GM23338 ENCFF613YON 297 bp overlap
ChIP GM23338 ENCFF613YON 163 bp overlap
ChIP H1 ENCFF232NZA 404 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 404 bp overlap
ChIP Hep-G2 ENCSR000ARI.EZH2.Hep-G2 181 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 260 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 193 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 264 bp overlap
ChIP astrocyte ENCFF365JTP 167 bp overlap
ChIP astrocyte ENCFF365JTP 150 bp overlap
ChIP dermal-fibroblast_Untransformed GSE126396.EZH2.dermal-fibroblast_Untransformed 404 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 214 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 404 bp overlap
ChIP hepatocyte ENCFF118DKH 318 bp overlap
ChIP hepatocyte ENCFF118DKH 82 bp overlap
ChIP hepatocyte ENCFF552DZB 143 bp overlap
ChIP keratinocyte ENCFF070STK 161 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 209 bp overlap
ChIP neural progenitor cell ENCFF018MKA 404 bp overlap
ChIP neural progenitor cell ENCFF472NFV 404 bp overlap
GATA1 6 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 85 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 63 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 215 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 180 bp overlap
ChIP erythroblast ENCFF867JAR 404 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 375 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 356 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 388 bp overlap
ChIP SK-N-SH ENCFF764OZD 347 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 189 bp overlap
GATA4 8 datasets
ChIP DE DE-GATA4-1 346 bp overlap
ChIP DE DE-GATA4-2 333 bp overlap
ChIP G296S GSE85628.GATA4.G296S 83 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 83 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 311 bp overlap
ChIP foregut GSE117136.GATA4.foregut 303 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 398 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 355 bp overlap
GATA6 15 datasets
ChIP DE DE-GATA6-1 294 bp overlap
ChIP DE DE-GATA6-2 396 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 383 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 369 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 404 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 345 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 404 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 404 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 124 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 380 bp overlap
ChIP foregut GSE117136.GATA6.foregut 374 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 328 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 404 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 392 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 282 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 336 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 234 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 120 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 56 bp overlap
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 239 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 404 bp overlap
ChIP hESC GSE133412.JARID2.hESC 268 bp overlap
ChIP hESC_TKO GSE133412.JARID2.hESC_TKO 356 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 96 bp overlap
MAX 1 dataset
ChIP K-562 ENCSR000EFV.MAX.K-562 106 bp overlap
MEN1 1 dataset
ChIP PC-3 GSE132827.MEN1.PC-3 404 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 404 bp overlap
MXI1 3 datasets
ChIP SK-N-SH ENCFF746HVJ 392 bp overlap
ChIP SK-N-SH ENCFF746HVJ 170 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 204 bp overlap
MYOG 1 dataset
ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 115 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 306 bp overlap
NEUROG2 4 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 187 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 183 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 174 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 183 bp overlap
PCGF2 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PCGF2.HEK293T_PCGF2fl 396 bp overlap
PHC1 1 dataset
ChIP HEK293T_PCGF2fl GSE119618.PHC1.HEK293T_PCGF2fl 111 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 378 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 378 bp overlap
POLR2A 1 dataset
ChIP sigmoid colon ENCFF748YVT 187 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 136 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 294 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 109 bp overlap
RAD21 2 datasets
ChIP RH4 GSE83726.RAD21.RH4 195 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 120 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 163 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 200 bp overlap
REST 1 dataset
ChIP K-562 ENCSR000BMW.REST.K-562 95 bp overlap
RING1 1 dataset
ChIP SYO-1_shCt GSE139053.RING1.SYO-1_shCt 404 bp overlap
RNF2 10 datasets
ChIP A-549 ENCSR798EGJ.RNF2.A-549 50 bp overlap
ChIP A-549 ENCSR798EGJ.RNF2.A-549 271 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.RNF2.HEK293T_PCGF1352fl 209 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.RNF2.HEK293T_PCGF1352fl_OHT 146 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.RNF2.HEK293T_PCGF1356fl 215 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.RNF2.HEK293T_PCGF1356fl_OHT 251 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.RNF2.HEK293T_PCGF135fl 272 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.RNF2.HEK293T_PCGF135fl_OHT 268 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.RNF2.HEK293T_PCGF2fl 319 bp overlap
ChIP HEK293T_RING1Bfl GSE119618.RNF2.HEK293T_RING1Bfl 239 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 121 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 71 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 100 bp overlap
SMARCC1 4 datasets
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 90 bp overlap
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 404 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 375 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 321 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 196 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 66 bp overlap
SS18 2 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 277 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 404 bp overlap
STAG1 1 dataset
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 152 bp overlap
SUZ12 20 datasets
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 307 bp overlap
ChIP H1 ENCFF507HGF 212 bp overlap
ChIP H1 ENCFF881NFR 404 bp overlap
ChIP HEK293T_PCGF1352fl GSE119618.SUZ12.HEK293T_PCGF1352fl 333 bp overlap
ChIP HEK293T_PCGF1352fl_OHT GSE119618.SUZ12.HEK293T_PCGF1352fl_OHT 329 bp overlap
ChIP HEK293T_PCGF1356fl GSE119618.SUZ12.HEK293T_PCGF1356fl 357 bp overlap
ChIP HEK293T_PCGF1356fl_OHT GSE119618.SUZ12.HEK293T_PCGF1356fl_OHT 353 bp overlap
ChIP HEK293T_PCGF135fl GSE119618.SUZ12.HEK293T_PCGF135fl 389 bp overlap
ChIP HEK293T_PCGF135fl_OHT GSE119618.SUZ12.HEK293T_PCGF135fl_OHT 359 bp overlap
ChIP HEK293T_PCGF2fl GSE119618.SUZ12.HEK293T_PCGF2fl 372 bp overlap
ChIP HEK293T_PCGF2fl_OHT GSE119618.SUZ12.HEK293T_PCGF2fl_OHT 365 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 116 bp overlap
ChIP NT2/D1 ENCFF574SXS 279 bp overlap
ChIP NT2/D1 ENCFF574SXS 404 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 404 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 56 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 249 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 210 bp overlap
ChIP hESC GSE133412.SUZ12.hESC 195 bp overlap
ChIP hESC_TKO GSE133412.SUZ12.hESC_TKO 204 bp overlap
TAL1 4 datasets
ChIP CD34 GSE52924.TAL1.CD34 110 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 132 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 141 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 148 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 196 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 69 bp overlap
ZBTB33 3 datasets
ChIP K562 ENCFF427SDV 133 bp overlap
ChIP K562 ENCFF875HLX 287 bp overlap
ChIP K562 ENCFF911VPU 161 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 147 bp overlap
ZSCAN29 2 datasets
ChIP K-562 ENCSR175SZH.ZSCAN29.K-562 86 bp overlap
ChIP K562 ENCFF797SOU 243 bp overlap