chr9 : 105,660,863 – 105,661,620
757 bp 103 TFs 1 linked gene
This 757 bp open chromatin element is linked to ENSG00000279609 and is bound by 103 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000279609 4.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:105,655,863 – 105,666,620
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
AR 10 datasets
ChIP 22Rv1 GSE96652.AR.22Rv1 217 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 275 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 135 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 171 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 124 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 107 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 252 bp overlap
ChIP prostate-cancer GSE136128.AR.prostate-cancer 231 bp overlap
ChIP prostate-cancer_PDX_58 GSE130408.AR.prostate-cancer_PDX_58 156 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 213 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1631.2 9 bp overlap
ATOH7 3 datasets
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Motif DE_24h DE_24h-ATOH7_MA1468.1 10 bp overlap
Motif DE_36h DE_36h-ATOH7_MA1468.1 10 bp overlap
Ahr::Arnt 2 datasets
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
Motif DE_36h DE_36h-AhrArnt_MA0006.2 5 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 137 bp overlap
BHLHA15 1 dataset
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
BRD4 1 dataset
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 218 bp overlap
CEBPA 1 dataset
ChIP THP-1_1-25D_2h GSE124032.CEBPA.THP-1_1-25D_2h 75 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 290 bp overlap
Crx 3 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_24h DE_24h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
Motif DE_36h DE_36h-EBF1_MA0154.5 11 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 166 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 166 bp overlap
ChIP T-47D_DMSO GSE148277.ESR1.T-47D_DMSO 185 bp overlap
Ebf4 2 datasets
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
Motif DE_36h DE_36h-Ebf4_MA2122.1 11 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 7 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 304 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 340 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 277 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 286 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 243 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 213 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 162 bp overlap
FOXD2 1 dataset
Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap
GATA6 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 293 bp overlap
GSC 3 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_24h DE_24h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
GSC2 3 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_24h DE_24h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 260 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 213 bp overlap
HNRNPH1 1 dataset
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 152 bp overlap
INSM1 3 datasets
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MXI1 3 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_24h DE_24h-MXI1_MA1108.3 6 bp overlap
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
NANOG 1 dataset
ChIP LNCaP_pNanog1_Dox GSE74799.NANOG.LNCaP_pNanog1_Dox 157 bp overlap
NEUROG1 3 datasets
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
Motif DE_24h DE_24h-NEUROG1_MA0623.2 10 bp overlap
Motif DE_36h DE_36h-NEUROG1_MA0623.2 10 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFIB 2 datasets
Motif DE_12h DE_12h-NFIB_MA1643.2 17 bp overlap
Motif DE_36h DE_36h-NFIB_MA1643.2 17 bp overlap
NFIC 3 datasets
Motif DE_12h DE_12h-NFIC_MA1527.2 15 bp overlap
Motif DE_24h DE_24h-NFIC_MA1527.2 15 bp overlap
Motif DE_36h DE_36h-NFIC_MA1527.2 15 bp overlap
NFIC::TLX1 3 datasets
Motif DE_12h DE_12h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_24h DE_24h-NFICTLX1_MA0119.1 14 bp overlap
Motif DE_36h DE_36h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 2 datasets
Motif DE_12h DE_12h-NFIX_MA1528.2 14 bp overlap
Motif DE_36h DE_36h-NFIX_MA1528.2 14 bp overlap
NKX2-3 3 datasets
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_24h DE_24h-NKX2-3_MA0672.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 3 datasets
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_24h DE_24h-NKX2-4_MA2003.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 3 datasets
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_24h DE_24h-NKX2-8_MA0673.2 8 bp overlap
Motif DE_36h DE_36h-NKX2-8_MA0673.2 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nkx2-1 3 datasets
Motif DE_12h DE_12h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_24h DE_24h-Nkx2-1_MA1994.2 7 bp overlap
Motif DE_36h DE_36h-Nkx2-1_MA1994.2 7 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
OLIG1 1 dataset
Motif DE_12h DE_12h-OLIG1_MA0826.1 10 bp overlap
OLIG2 1 dataset
Motif DE_12h DE_12h-OLIG2_MA0678.1 10 bp overlap
OLIG3 1 dataset
Motif DE_12h DE_12h-OLIG3_MA0827.1 10 bp overlap
OTX1 3 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_24h DE_24h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
PGR 1 dataset
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 209 bp overlap
PITX1 3 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_24h DE_24h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
PITX2 3 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_24h DE_24h-PITX2_MA1547.2 8 bp overlap
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
PITX3 3 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_24h DE_24h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 426 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 677 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 145 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_24h DE_24h-POU3F1_MA0786.2 10 bp overlap
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 515 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 706 bp overlap
POU5F1B 3 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_24h DE_24h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_36h DE_36h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 417 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 155 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 111 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RHOXF1 3 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_24h DE_24h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 288 bp overlap
SMARCC1 1 dataset
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 206 bp overlap
SNAI1 1 dataset
Motif DE_12h DE_12h-SNAI1_MA1558.2 7 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_36h DE_36h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
STAT1_pS727 1 dataset
ChIP SET-2 GSE100566.STAT1_pS727.SET-2 158 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TCF12 1 dataset
Motif DE_12h DE_12h-TCF12_MA1648.2 7 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
Motif DE_12h DE_12h-TCF3_MA0522.4 7 bp overlap
TFAP2A 4 datasets
Motif DE_12h DE_12h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_36h DE_36h-TFAP2A_MA0003.5 9 bp overlap
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 131 bp overlap
TFAP2B 3 datasets
Motif DE_12h DE_12h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_24h DE_24h-TFAP2B_MA0812.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2B_MA0812.2 9 bp overlap
TFAP2C 4 datasets
Motif DE_12h DE_12h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_36h DE_36h-TFAP2C_MA0814.3 9 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 393 bp overlap
TFAP2E 3 datasets
Motif DE_12h DE_12h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
Motif DE_36h DE_36h-TFAP2E_MA1569.2 9 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 339 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZFP42 1 dataset
Motif DE_36h DE_36h-ZFP42_MA1651.2 13 bp overlap
ZKSCAN3 3 datasets
Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_24h DE_24h-ZKSCAN3_MA1973.2 14 bp overlap
Motif DE_36h DE_36h-ZKSCAN3_MA1973.2 14 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 140 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 80 bp overlap
ChIP K562 ENCFF361LXT 226 bp overlap
ZNF136 3 datasets
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
Motif DE_24h DE_24h-ZNF136_MA1588.1 15 bp overlap
Motif DE_36h DE_36h-ZNF136_MA1588.1 15 bp overlap
ZNF143 1 dataset
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ZNF257 3 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_36h DE_36h-ZNF257_MA1710.2 10 bp overlap
ChIP HEK293T GSE78099.ZNF257.HEK293T 336 bp overlap
ZNF274 1 dataset
Motif DE_12h DE_12h-ZNF274_MA1592.2 12 bp overlap
ZNF317 3 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
Motif DE_36h DE_36h-ZNF317_MA1593.2 8 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 62 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_24h DE_24h-ZNF460_MA1596.1 16 bp overlap
Motif DE_36h DE_36h-ZNF460_MA1596.1 16 bp overlap
ZNF549 3 datasets
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Motif DE_24h DE_24h-ZNF549_MA1728.2 8 bp overlap
Motif DE_36h DE_36h-ZNF549_MA1728.2 8 bp overlap
ZNF667 2 datasets
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF677 3 datasets
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
Motif DE_24h DE_24h-ZNF677_MA2101.1 12 bp overlap
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF692 2 datasets
Motif DE_12h DE_12h-ZNF692_MA1986.2 8 bp overlap
Motif DE_36h DE_36h-ZNF692_MA1986.2 8 bp overlap
ZNF766 1 dataset
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
ZNF784 1 dataset
Motif DE_12h DE_12h-ZNF784_MA1717.2 8 bp overlap
Zfp335 4 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_24h DE_24h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Motif DE_36h DE_36h-Zfp335_MA2002.2 7 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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