chr9 : 20,670,378 – 20,670,900
522 bp 89 TFs 0 linked genes
This 522 bp open chromatin element has no linked target genes and is bound by 89 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:20,665,378 – 20,675,900
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
89 transcription factors
Source
Cell type
ARNT2 2 datasets
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
Motif DE_60h DE_60h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
Arnt 2 datasets
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
Motif DE_60h DE_60h-Arnt_MA0004.1 6 bp overlap
Arntl 2 datasets
Motif DE_12h DE_12h-Arntl_MA0603.2 8 bp overlap
Motif DE_60h DE_60h-Arntl_MA0603.2 8 bp overlap
BHLHE40 2 datasets
Motif DE_12h DE_12h-BHLHE40_MA0464.3 8 bp overlap
Motif DE_60h DE_60h-BHLHE40_MA0464.3 8 bp overlap
BHLHE41 2 datasets
Motif DE_12h DE_12h-BHLHE41_MA0636.1 10 bp overlap
Motif DE_60h DE_60h-BHLHE41_MA0636.1 10 bp overlap
Bcl11B 1 dataset
Motif DE_12h DE_12h-Bcl11B_MA1989.2 9 bp overlap
CLOCK 2 datasets
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
Motif DE_60h DE_60h-CLOCK_MA0819.3 7 bp overlap
Creb3l2 2 datasets
Motif DE_12h DE_12h-Creb3l2_MA0608.1 9 bp overlap
Motif DE_60h DE_60h-Creb3l2_MA0608.1 9 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
DUX4 3 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_60h DE_60h-DUX4_MA0468.1 11 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 235 bp overlap
DUXA 2 datasets
Motif DE_12h DE_12h-DUXA_MA0884.2 13 bp overlap
Motif DE_60h DE_60h-DUXA_MA0884.2 13 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
E2F6 2 datasets
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
EOMES 2 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 205 bp overlap
ETV5::DRGX 2 datasets
Motif DE_12h DE_12h-ETV5DRGX_MA1944.2 12 bp overlap
Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 262 bp overlap
ChIP DE DE-FOXA2-2 276 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 425 bp overlap
ChIP DE DE-GATA4-2 452 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 456 bp overlap
ChIP DE DE-GATA6-2 471 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 325 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 411 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 408 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 379 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 453 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 419 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 397 bp overlap
GFI1 2 datasets
Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap
Motif DE_60h DE_60h-GFI1_MA0038.3 11 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
HES1 2 datasets
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
Motif DE_60h DE_60h-HES1_MA1099.3 8 bp overlap
HEY2 2 datasets
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
Motif DE_60h DE_60h-HEY2_MA0649.2 9 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
IRF2 2 datasets
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 294 bp overlap
KLF1 2 datasets
Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF14 2 datasets
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF2 2 datasets
Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 2 datasets
Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KLF5 4 datasets
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
MAX 2 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
Motif DE_60h DE_60h-MAX_MA0058.4 6 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MEIS1 2 datasets
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MGA 1 dataset
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 212 bp overlap
MLXIPL 2 datasets
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
Motif DE_60h DE_60h-MLXIPL_MA0664.2 8 bp overlap
MNT 2 datasets
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
Motif DE_60h DE_60h-MNT_MA0825.2 6 bp overlap
Mlxip 2 datasets
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
Motif DE_60h DE_60h-Mlxip_MA0622.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 211 bp overlap
NFYA 2 datasets
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
Motif DE_60h DE_60h-NFYA_MA0060.4 8 bp overlap
NFYC 2 datasets
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
Motif DE_60h DE_60h-NFYC_MA1644.2 7 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR6A1 1 dataset
Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PHOX2A 2 datasets
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
Motif DE_60h DE_60h-PHOX2A_MA0713.1 11 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
PROP1 2 datasets
Motif DE_12h DE_12h-PROP1_MA0715.1 11 bp overlap
Motif DE_60h DE_60h-PROP1_MA0715.1 11 bp overlap
RBPJ 3 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 158 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SETDB1 1 dataset
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 309 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 340 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 355 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 270 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 389 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 347 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 293 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 270 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SPIC 1 dataset
Motif DE_12h DE_12h-SPIC_MA0687.2 13 bp overlap
SREBF1 1 dataset
Motif DE_12h DE_12h-SREBF1_MA0829.3 10 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 283 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TBR1 1 dataset
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_12h DE_12h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_12h DE_12h-TBX15_MA0803.1 8 bp overlap
TBX21 1 dataset
Motif DE_12h DE_12h-TBX21_MA0690.3 10 bp overlap
TBX4 1 dataset
Motif DE_12h DE_12h-TBX4_MA0806.1 8 bp overlap
TFE3 2 datasets
Motif DE_12h DE_12h-TFE3_MA0831.3 10 bp overlap
Motif DE_60h DE_60h-TFE3_MA0831.3 10 bp overlap
ZBTB33 1 dataset
Motif DE_12h DE_12h-ZBTB33_MA0527.2 10 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZKSCAN5 2 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF382 1 dataset
Motif DE_12h DE_12h-ZNF382_MA1594.1 24 bp overlap
ZNF684 1 dataset
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF740 2 datasets
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
ZNF75D 2 datasets
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
Zic1::Zic2 1 dataset
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic3 1 dataset
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
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