chr9 : 13,431,057 – 13,431,422

365 bp 74 TFs 1 linked gene

This 365 bp open chromatin element is linked to LINC01235 and is bound by 74 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
LINC01235		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

74 transcription factors

ARID2 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 365 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-T910M 252 bp overlap

BCL6 1 dataset

Motif DE_12h DE_12h-BCL6_MA0463.3 13 bp overlap

BRD4 7 datasets

ChIP RH4 GSE83726.BRD4.RH4 239 bp overlap

ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 365 bp overlap

ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 332 bp overlap

ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 365 bp overlap

ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 128 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 291 bp overlap

ChIP hESC GSE33281.BRD4.hESC 67 bp overlap

CBX8 1 dataset

ChIP A-549 ENCSR616MOB.CBX8.A-549 266 bp overlap

CTCF 3 datasets

ChIP RH4 GSE83726.CTCF.RH4 314 bp overlap

ChIP anterior-temporal-cortex_adult GSE116825.CTCF.anterior-temporal-cortex_adult 288 bp overlap

ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 231 bp overlap

DDX5 1 dataset

ChIP NTERA2 GSE58641.DDX5.NTERA2 161 bp overlap

DPF2 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 55 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 204 bp overlap

E2F1 1 dataset

ChIP HeLa GSE22478.E2F1.HeLa 203 bp overlap

ESR1 2 datasets

ChIP MCF-7_Veh GSE67295.ESR1.MCF-7_Veh 179 bp overlap

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 282 bp overlap

FEZF1 1 dataset

ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 128 bp overlap

FOXO1-PAX3 1 dataset

ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 325 bp overlap

GTF3C2 1 dataset

ChIP H9 GSE94418.GTF3C2.H9 256 bp overlap

HCFC1R1 1 dataset

ChIP cartilage GSE100311.HCFC1R1.cartilage 302 bp overlap

HDAC2 2 datasets

ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 317 bp overlap

ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 365 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 365 bp overlap

INSM1 1 dataset

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

IRF8 1 dataset

ChIP THP-1 GSE123872.IRF8.THP-1 192 bp overlap

KDM4A 1 dataset

ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 171 bp overlap

KLF1 2 datasets

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

ChIP HEK293 GSE76494.KLF1.HEK293 104 bp overlap

KLF15 1 dataset

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF4 3 datasets

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

ChIP WA09 GSE105028.KLF4.WA09 164 bp overlap

ChIP hiPSC GSE56567.KLF4.hiPSC 158 bp overlap

KLF7 1 dataset

Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap

KLF9 1 dataset

ChIP GBM1A GSE62211.KLF9.GBM1A 112 bp overlap

KMT2C 1 dataset

ChIP BIN-67_ctrl GSE117734.KMT2C.BIN-67_ctrl 365 bp overlap

KMT2D 1 dataset

ChIP BIN-67_ctrl GSE117734.KMT2D.BIN-67_ctrl 152 bp overlap

MAX 1 dataset

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 164 bp overlap

MAZ 1 dataset

ChIP HEK293 GSE76494.MAZ.HEK293 302 bp overlap

MED1 1 dataset

ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 215 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 347 bp overlap

MYC 1 dataset

ChIP P493-6_MST-312 GSE77061.MYC.P493-6_MST-312 158 bp overlap

MYCN 2 datasets

ChIP Kelly GSE94782.MYCN.Kelly 119 bp overlap

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 353 bp overlap

MYOD1 2 datasets

ChIP RH4 GSE83726.MYOD1.RH4 316 bp overlap

ChIP rhabdomyosarcoma GSE50413.MYOD1.rhabdomyosarcoma 166 bp overlap

MYOG 2 datasets

ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 230 bp overlap

ChIP RH4_Entinostat-6H GSE116344.MYOG.RH4_Entinostat-6H 303 bp overlap

NANOG 1 dataset

ChIP WA09 GSE105028.NANOG.WA09 168 bp overlap

NCOA2 1 dataset

ChIP MCF-7 ERP000901.NCOA2.MCF-7 180 bp overlap

NCOR1 1 dataset

ChIP HEK293T_SICTR GSE35197.NCOR1.HEK293T_SICTR 199 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 106 bp overlap

NUTM1 1 dataset

ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 365 bp overlap

OLIG2 2 datasets

ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 365 bp overlap

ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 348 bp overlap

OSR2 2 datasets

ChIP HEK293 ENCSR324LTM.OSR2.HEK293 93 bp overlap

ChIP HEK293 GSE76494.OSR2.HEK293 56 bp overlap

PATZ1 1 dataset

Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 365 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 365 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 342 bp overlap

PKNOX1 1 dataset

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 66 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 202 bp overlap

POU5F1 3 datasets

ChIP BG03 GSE21614.POU5F1.BG03 275 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 275 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 144 bp overlap

RAD21 1 dataset

ChIP RH4 GSE83726.RAD21.RH4 365 bp overlap

RBBP4 1 dataset

ChIP SCMC GSE155861.RBBP4.SCMC 311 bp overlap

RUNX1 1 dataset

ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 207 bp overlap

SMARCA4 1 dataset

ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 256 bp overlap

SMARCC1 4 datasets

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 365 bp overlap

ChIP BIN-67_ctrl GSE117734.SMARCC1.BIN-67_ctrl 282 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 99 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 188 bp overlap

SOX2 1 dataset

ChIP HNSC GSE69479.SOX2.HNSC 67 bp overlap

SOX8 1 dataset

ChIP RH4 GSE116344.SOX8.RH4 247 bp overlap

SPI1 1 dataset

ChIP macrophage_IFNG GSE47188.SPI1.macrophage_IFNG 211 bp overlap

SS18 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 118 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 107 bp overlap

SS18-SSX 1 dataset

ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 350 bp overlap

YY1 1 dataset

ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 316 bp overlap

ZBTB42 1 dataset

ChIP HEK293 GSE76494.ZBTB42.HEK293 317 bp overlap

ZBTB48 2 datasets

ChIP HEK293 ENCSR781EQJ.ZBTB48.HEK293 308 bp overlap

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 316 bp overlap

ZBTB6 1 dataset

ChIP HEK293 GSE76494.ZBTB6.HEK293 215 bp overlap

ZKSCAN3 1 dataset

Motif DE_12h DE_12h-ZKSCAN3_MA1973.2 14 bp overlap

ZNF133 1 dataset

ChIP HEK293 ENCSR283MWQ.ZNF133.HEK293 116 bp overlap

ZNF143 1 dataset

ChIP HeLa GSE39263.ZNF143.HeLa 214 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF189 1 dataset

ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 173 bp overlap

ZNF2 1 dataset

ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 169 bp overlap

ZNF335 2 datasets

ChIP HEK293 ENCFF784SLD 365 bp overlap

ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 365 bp overlap

ZNF384 1 dataset

ChIP HEK293T ENCFF019DZX 51 bp overlap

ZNF682 1 dataset

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

ZNF708 1 dataset

Motif DE_12h DE_12h-ZNF708_MA1730.2 9 bp overlap

ZSCAN4 1 dataset

ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 365 bp overlap

Zfp335 2 datasets

Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap