chr9 : 8,751,511 – 8,752,515
1,004 bp 88 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to PTPRD and is bound by 88 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PTPRD 18.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:8,746,511 – 8,757,515
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
ATF3 1 dataset
Motif DE_36h DE_36h-ATF3_MA0605.3 10 bp overlap
ATF7 1 dataset
Motif DE_36h DE_36h-ATF7_MA0834.2 10 bp overlap
BACH2 1 dataset
Motif DE_36h DE_36h-BACH2_MA1470.2 19 bp overlap
BCL6B 2 datasets
Motif DE_36h DE_36h-BCL6B_MA0731.1 17 bp overlap
Motif DE_60h DE_60h-BCL6B_MA0731.1 17 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 503 bp overlap
CDX1 1 dataset
Motif DE_36h DE_36h-CDX1_MA0878.3 10 bp overlap
CDX4 1 dataset
Motif DE_36h DE_36h-CDX4_MA1473.2 9 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 213 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 661 bp overlap
CREB1 1 dataset
Motif DE_36h DE_36h-CREB1_MA0018.5 8 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 306 bp overlap
Creb5 1 dataset
Motif DE_36h DE_36h-Creb5_MA0840.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 692 bp overlap
ESR2 1 dataset
Motif DE_36h DE_36h-ESR2_MA0258.2 15 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 215 bp overlap
FOS::JUN 1 dataset
Motif DE_36h DE_36h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 1 dataset
Motif DE_36h DE_36h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 1 dataset
Motif DE_36h DE_36h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 1 dataset
Motif DE_36h DE_36h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL1::JUND 1 dataset
Motif DE_36h DE_36h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2 1 dataset
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 226 bp overlap
FOSL2::JUN 1 dataset
Motif DE_36h DE_36h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_36h DE_36h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 1 dataset
Motif DE_36h DE_36h-FOSL2JUND_MA1145.2 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 570 bp overlap
ChIP DE DE-FOXA2-2 619 bp overlap
FOXN3 1 dataset
Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_36h DE_36h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_36h DE_36h-FOXO1FLI1_MA1956.2 13 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 1004 bp overlap
ChIP DE DE-GATA4-2 1004 bp overlap
Motif DE_36h DE_36h-GATA4_MA0482.3 8 bp overlap
GATA5 1 dataset
Motif DE_36h DE_36h-GATA5_MA0766.3 8 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 820 bp overlap
ChIP DE DE-GATA6-2 1004 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 1004 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 942 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 1002 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 859 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 800 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 814 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 761 bp overlap
HIC2 1 dataset
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
HINFP 1 dataset
Motif DE_36h DE_36h-HINFP_MA0131.3 8 bp overlap
HOXB2::ELK1 1 dataset
Motif DE_36h DE_36h-HOXB2ELK1_MA1957.1 14 bp overlap
HOXB9 1 dataset
Motif DE_36h DE_36h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_36h DE_36h-HOXC10_MA0905.2 9 bp overlap
HOXC11 1 dataset
Motif DE_36h DE_36h-HOXC11_MA0651.3 11 bp overlap
HOXC12 1 dataset
Motif DE_36h DE_36h-HOXC12_MA0906.2 10 bp overlap
HOXC9 1 dataset
Motif DE_36h DE_36h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_36h DE_36h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_36h DE_36h-HOXD11_MA0908.2 9 bp overlap
Hoxa11 1 dataset
Motif DE_36h DE_36h-Hoxa11_MA0911.2 9 bp overlap
Hoxd13 2 datasets
Motif DE_36h DE_36h-Hoxd13_MA0909.4 7 bp overlap
Motif DE_60h DE_60h-Hoxd13_MA0909.4 7 bp overlap
JDP2 1 dataset
Motif DE_36h DE_36h-JDP2_MA0656.2 10 bp overlap
JUN 7 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 830 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 318 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 999 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 1004 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 590 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 808 bp overlap
JUN::JUNB 1 dataset
Motif DE_36h DE_36h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 1 dataset
Motif DE_36h DE_36h-JUNB_MA1140.3 11 bp overlap
MAF 1 dataset
Motif DE_36h DE_36h-MAF_MA1520.2 13 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 213 bp overlap
MYC 1 dataset
ChIP Jurkat GSE83777.MYC.Jurkat 192 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 169 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 513 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 125 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 224 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 546 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 375 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 258 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NR1I2 1 dataset
Motif DE_36h DE_36h-NR1I2_MA1533.2 15 bp overlap
NR2C1 2 datasets
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NRL 1 dataset
Motif DE_36h DE_36h-NRL_MA0842.3 12 bp overlap
Nr1H2 2 datasets
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 1 dataset
Motif DE_36h DE_36h-Nr1h3Rxra_MA0494.2 16 bp overlap
Nr2F6 1 dataset
Motif DE_36h DE_36h-Nr2F6_MA0728.1 15 bp overlap
POU5F1 3 datasets
Motif DE_36h DE_36h-POU5F1_MA1115.2 7 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 381 bp overlap
Prdm15 2 datasets
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RARA 2 datasets
Motif DE_36h DE_36h-RARA_MA0730.1 17 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 266 bp overlap
RORA 1 dataset
Motif DE_36h DE_36h-RORA_MA0071.1 10 bp overlap
RORB 1 dataset
Motif DE_36h DE_36h-RORB_MA1150.2 10 bp overlap
RORC 1 dataset
Motif DE_36h DE_36h-RORC_MA1151.2 10 bp overlap
Rarb 1 dataset
Motif DE_36h DE_36h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 781 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 774 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 788 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 743 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 265 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 311 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 800 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 917 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 849 bp overlap
SMARCA4 4 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 135 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 141 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 146 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 262 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 368 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 280 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 239 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 261 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 273 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 762 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 82 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 202 bp overlap
TBR1 1 dataset
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX2 1 dataset
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_36h DE_36h-TBX20_MA0689.1 11 bp overlap
TBX3 1 dataset
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TERF2 1 dataset
ChIP LCL GSE55053.TERF2.LCL 134 bp overlap
TFAP2C 1 dataset
ChIP HCC1954 GSE126897.TFAP2C.HCC1954 150 bp overlap
Tbx6 1 dataset
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Yy1 1 dataset
Motif DE_36h DE_36h-Yy1_MA0095.4 8 bp overlap
ZKSCAN1 1 dataset
Motif DE_36h DE_36h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF175 1 dataset
Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap
ZNF652 1 dataset
Motif DE_36h DE_36h-ZNF652_MA1657.2 9 bp overlap
ZNF684 2 datasets
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF766 1 dataset
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
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