chr7 : 140,455,562 140,456,050
488 bp 50 TFs 6 linked genes
This 488 bp open chromatin element is linked to 6 target genes and is bound by 50 transcription factors.
Linked Genes
6 genes
Gene Expression Dist. to TSS Distance Link type
MKRN1 23.6 kb Distal Multiome
RAB19 51.8 kb Distal Multiome
SLC37A3 57.4 kb Distal Multiome
DENND2A 184.9 kb Distal Multiome
NDUFB2 240.8 kb Distal Multiome
KDM7A 278.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:140,450,562 – 140,461,050
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
50 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 327 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 402 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 308 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 162 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 157 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 176 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 109 bp overlap
CREB1 1 dataset
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 223 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 212 bp overlap
CTCF 1 dataset
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 178 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 268 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 287 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 142 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 128 bp overlap
ChIP hESC GSE17917.EP300.hESC 430 bp overlap
ESR1 1 dataset
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 288 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 379 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 158 bp overlap
HDAC2 2 datasets
ChIP WA01 ENCSR000AVB.HDAC2.WA01 154 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 139 bp overlap
JUN 3 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 347 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 284 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 488 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 94 bp overlap
KLF4 4 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 249 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 377 bp overlap
ChIP WA09 GSE105028.KLF4.WA09 296 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 201 bp overlap
MAX 3 datasets
ChIP H1 ENCFF601FOM 201 bp overlap
ChIP H1 ENCFF914VQY 151 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 174 bp overlap
MXI1 2 datasets
ChIP H1 ENCFF963FZS 236 bp overlap
ChIP WA01 ENCSR000EBR.MXI1.WA01 170 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 149 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 488 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 305 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 488 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 409 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 179 bp overlap
ChIP hESC GSE18292.NANOG.hESC 350 bp overlap
ChIP hESC GSE20650.NANOG.hESC 275 bp overlap
NFKB2 1 dataset
ChIP L1236 GSE63736.NFKB2.L1236 61 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 448 bp overlap
ChIP transverse colon ENCFF607LKE 256 bp overlap
ChIP transverse colon ENCFF610RWV 165 bp overlap
POU5F1 11 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 119 bp overlap
ChIP GM23338 ENCFF333SNB 273 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 488 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 286 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 488 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 140 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 125 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 383 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 343 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 433 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 161 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 423 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 234 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 125 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 185 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 323 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 187 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 164 bp overlap
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 132 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 108 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 208 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 157 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 414 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 292 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 267 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 194 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 437 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 221 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 292 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 334 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 442 bp overlap
SP1 3 datasets
ChIP H1 ENCFF263FUH 302 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 266 bp overlap
ChIP WTC11 ENCFF688PEU 380 bp overlap
SP4 3 datasets
ChIP H1 ENCFF473YOB 327 bp overlap
ChIP H1 ENCFF473YOB 90 bp overlap
ChIP WA01 ENCSR000BQV.SP4.WA01 164 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 321 bp overlap
TBP 2 datasets
ChIP H1 ENCFF859IIO 377 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 295 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 133 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 332 bp overlap
TEAD4 3 datasets
ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 204 bp overlap
ChIP BJ_fibroblast_CD13-pos GSE114367.TEAD4.BJ_fibroblast_CD13-pos 252 bp overlap
ChIP H1 ENCFF778PAX 243 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 133 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 283 bp overlap
TRIM28 2 datasets
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 245 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 205 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 120 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 171 bp overlap
ChIP WTC11 ENCFF699QGS 280 bp overlap
USF2 3 datasets
ChIP H1 ENCFF434EDF 217 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 121 bp overlap
ChIP WTC11 ENCFF139JAW 252 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 266 bp overlap
ZNF121 1 dataset
ChIP WTC11 ENCFF291API 254 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 367 bp overlap