chr6 : 90,484,972 90,485,152
180 bp 66 TFs 0 linked genes
This 180 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:90,479,972 – 90,490,152
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 161 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 162 bp overlap
BARX1 1 dataset
Motif ES_0h ES_0h-BARX1_MA0875.2 6 bp overlap
BCL11A 3 datasets
ChIP H1 ENCFF833IPY 141 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 125 bp overlap
ChIP WA01 ENCSR000BIP.BCL11A.WA01 177 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 180 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 180 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 180 bp overlap
BRD4 3 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 77 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 180 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 180 bp overlap
BSX 1 dataset
Motif ES_0h ES_0h-BSX_MA0876.2 6 bp overlap
CHD7 3 datasets
ChIP H1 ENCFF126NLU 180 bp overlap
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 180 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 180 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 180 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 180 bp overlap
CTCF 7 datasets
ChIP dorsolateral prefrontal cortex ENCFF267VHH 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF458OBF 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696JOF 98 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF733NZH 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 180 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF812HQJ 180 bp overlap
DLX1 1 dataset
Motif ES_0h ES_0h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif ES_0h ES_0h-DLX6_MA0882.2 6 bp overlap
Dlx3 1 dataset
Motif ES_0h ES_0h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif ES_0h ES_0h-Dlx4_MA0881.2 6 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 180 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 180 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 180 bp overlap
ChIP neural cell ENCFF442QNK 180 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 168 bp overlap
GBX2 1 dataset
Motif ES_0h ES_0h-GBX2_MA0890.2 6 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 180 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 141 bp overlap
HESX1 1 dataset
Motif ES_0h ES_0h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif ES_0h ES_0h-HOXA7_MA1498.3 6 bp overlap
Hmx1 1 dataset
Motif ES_0h ES_0h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif ES_0h ES_0h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif ES_0h ES_0h-Hmx3_MA0898.2 9 bp overlap
IRF2 1 dataset
Motif ES_0h ES_0h-IRF2_MA0051.2 16 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 62 bp overlap
KDM5B 1 dataset
ChIP HCC2157 GSE46055.KDM5B.HCC2157 180 bp overlap
LBX2 1 dataset
Motif ES_0h ES_0h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif ES_0h ES_0h-LHX2_MA0700.3 6 bp overlap
MAFK 1 dataset
ChIP H1 ENCFF854XWE 180 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 148 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 115 bp overlap
MSX1 1 dataset
Motif ES_0h ES_0h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif ES_0h ES_0h-MSX2_MA0708.3 6 bp overlap
Msx3 1 dataset
Motif ES_0h ES_0h-Msx3_MA0709.2 6 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 121 bp overlap
ChIP H1 ENCFF747ZPQ 121 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 180 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 180 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 180 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 180 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 180 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 180 bp overlap
ChIP hESC GSE20650.NANOG.hESC 180 bp overlap
ChIP hESC GSE18292.NANOG.hESC 180 bp overlap
Nobox 1 dataset
Motif ES_0h ES_0h-Nobox_MA0125.2 6 bp overlap
OLIG2 1 dataset
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 90 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 178 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 168 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 180 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 180 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 160 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 180 bp overlap
ChIP neural cell ENCFF564MOT 180 bp overlap
RARA 2 datasets
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 126 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 180 bp overlap
RAX 1 dataset
Motif ES_0h ES_0h-RAX_MA0718.2 6 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 180 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 180 bp overlap
REST 3 datasets
ChIP hippocampus GSE144226.REST.hippocampus 180 bp overlap
ChIP neural ENCSR000BTV.REST.neural 180 bp overlap
ChIP neural cell ENCFF882LXX 180 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 167 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000BIS.SIN3A.WA01 154 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 133 bp overlap
SMARCA4 5 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 180 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 180 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 178 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 180 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 180 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 180 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 180 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 180 bp overlap
ChIP neural cell ENCFF795YGY 180 bp overlap
SOX2 11 datasets
ChIP H9 GSE46837.SOX2.H9 159 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 180 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 167 bp overlap
ChIP hESC GSE69479.SOX2.hESC 180 bp overlap
ChIP hESC GSE18292.SOX2.hESC 118 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 180 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 180 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 180 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 180 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 174 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 180 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 180 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 180 bp overlap
STAT3 2 datasets
ChIP A-137 GSE85579.STAT3.A-137 144 bp overlap
ChIP A139 GSE85579.STAT3.A139 180 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 154 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 158 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 150 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 152 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 167 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 180 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 143 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF331 3 datasets
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ChIP GM23338 ENCFF410NSZ 180 bp overlap
ChIP GM23338 ENCSR918LRB.ZNF331.GM23338 141 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 180 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 180 bp overlap