chr6 : 90,329,557 – 90,330,064
507 bp 77 TFs 0 linked genes
This 507 bp open chromatin element has no linked target genes and is bound by 77 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:90,324,557 – 90,335,064
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
BRD4 5 datasets
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 339 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 315 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 208 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 118 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-pos 415 bp overlap
CTCF 1 dataset
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 110 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
EBF1 2 datasets
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 273 bp overlap
EBF3 1 dataset
Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 397 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 256 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 250 bp overlap
Ebf2 1 dataset
Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 507 bp overlap
ChIP DE DE-FOXA2-2 507 bp overlap
FOXH1 4 datasets
Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap
Motif DE_36h DE_36h-FOXH1_MA0479.2 8 bp overlap
Motif DE_48h DE_48h-FOXH1_MA0479.2 8 bp overlap
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA2 3 datasets
ChIP SH-SY5Y ENCFF485YIB 373 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 377 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 292 bp overlap
GATA3 7 datasets
ChIP BE2C GSE65664.GATA3.BE2C 206 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 243 bp overlap
ChIP NGP GSE65664.GATA3.NGP 156 bp overlap
ChIP SH-SY5Y ENCFF475HYF 481 bp overlap
ChIP SH-SY5Y ENCFF475HYF 298 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 391 bp overlap
ChIP SK-N-SH ENCFF040SSB 140 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 491 bp overlap
ChIP DE DE-GATA4-2 507 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 241 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 481 bp overlap
ChIP DE DE-GATA6-2 507 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 507 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 507 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 507 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 507 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 405 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 422 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 266 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 468 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 507 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 274 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 480 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 345 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 507 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 254 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 495 bp overlap
KLF9 10 datasets
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_12h DE_12h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 89 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 109 bp overlap
MAFK 1 dataset
ChIP HepG2 ENCFF743ZOF 66 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 335 bp overlap
MAZ 3 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MEF2B 2 datasets
ChIP DLBCL GSE110682.MEF2B.DLBCL 380 bp overlap
ChIP tonsil GSE110682.MEF2B.tonsil 214 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 189 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 107 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 470 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 452 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 124 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 507 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 507 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 214 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 244 bp overlap
ChIP hESC GSE20650.NANOG.hESC 106 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
PATZ1 3 datasets
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
PAX5 5 datasets
Motif DE_12h DE_12h-PAX5_MA0014.4 8 bp overlap
Motif DE_24h DE_24h-PAX5_MA0014.4 8 bp overlap
Motif DE_36h DE_36h-PAX5_MA0014.4 8 bp overlap
Motif DE_48h DE_48h-PAX5_MA0014.4 8 bp overlap
Motif DE_60h DE_60h-PAX5_MA0014.4 8 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 422 bp overlap
POU5F1 13 datasets
ChIP BG03 GSE21614.POU5F1.BG03 137 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 390 bp overlap
ChIP GM23338 ENCFF333SNB 188 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 481 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 387 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 459 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 210 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 136 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 139 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 507 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 507 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 192 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 321 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 370 bp overlap
RARG 5 datasets
Motif DE_12h DE_12h-RARG_MA1553.2 13 bp overlap
Motif DE_24h DE_24h-RARG_MA1553.2 13 bp overlap
Motif DE_36h DE_36h-RARG_MA1553.2 13 bp overlap
Motif DE_48h DE_48h-RARG_MA1553.2 13 bp overlap
Motif DE_60h DE_60h-RARG_MA1553.2 13 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 317 bp overlap
RFX7 2 datasets
Motif DE_12h DE_12h-RFX7_MA1554.2 8 bp overlap
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RXRB 5 datasets
Motif DE_12h DE_12h-RXRB_MA1555.1 14 bp overlap
Motif DE_24h DE_24h-RXRB_MA1555.1 14 bp overlap
Motif DE_36h DE_36h-RXRB_MA1555.1 14 bp overlap
Motif DE_48h DE_48h-RXRB_MA1555.1 14 bp overlap
Motif DE_60h DE_60h-RXRB_MA1555.1 14 bp overlap
RXRG 5 datasets
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA1556.1 14 bp overlap
Motif DE_36h DE_36h-RXRG_MA1556.1 14 bp overlap
Motif DE_48h DE_48h-RXRG_MA1556.1 14 bp overlap
Motif DE_60h DE_60h-RXRG_MA1556.1 14 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 79 bp overlap
SMAD2 4 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 266 bp overlap
ChIP hESC GSE29422.SMAD2.hESC 176 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 479 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 409 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 483 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 507 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 507 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 507 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 507 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 507 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 507 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 491 bp overlap
SMAD3 3 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 173 bp overlap
ChIP endoderm GSE29422.SMAD3.endoderm 249 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 193 bp overlap
SMAD4 2 datasets
ChIP endoderm GSE29422.SMAD4.endoderm 230 bp overlap
ChIP hESC GSE29422.SMAD4.hESC 166 bp overlap
SMARCA2 1 dataset
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 254 bp overlap
SMARCA4 4 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 218 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 157 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 485 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 443 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 193 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 443 bp overlap
SMARCC1 4 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 463 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 507 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 95 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 147 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 340 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 186 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 124 bp overlap
SP4 3 datasets
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 76 bp overlap
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 158 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 302 bp overlap
ZNF148 3 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 166 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 270 bp overlap
ZNF257 3 datasets
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
Motif DE_48h DE_48h-ZNF257_MA1710.2 10 bp overlap
Motif DE_60h DE_60h-ZNF257_MA1710.2 10 bp overlap
ZNF263 5 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_48h DE_48h-ZNF263_MA0528.3 7 bp overlap
Motif DE_60h DE_60h-ZNF263_MA0528.3 7 bp overlap
ChIP HEK293 ENCFF336CWQ 451 bp overlap
ChIP HEK293T GSE78099.ZNF263.HEK293T 143 bp overlap
ZNF281 3 datasets
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 179 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 157 bp overlap
ZNF317 3 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif DE_48h DE_48h-ZNF317_MA1593.2 8 bp overlap
Motif DE_60h DE_60h-ZNF317_MA1593.2 8 bp overlap
ZNF320 5 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_48h DE_48h-ZNF320_MA1976.2 20 bp overlap
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
Motif DE_60h DE_60h-ZNF320_MA1976.2 20 bp overlap
ZNF460 3 datasets
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
ZSCAN4 6 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_36h DE_36h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap
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