chr6 : 18,336,422 – 18,336,795
373 bp 79 TFs 0 linked genes
This 373 bp open chromatin element has no linked target genes and is bound by 79 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:18,331,422 – 18,341,795
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 373 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 127 bp overlap
ATOH7 1 dataset
Motif DE_12h DE_12h-ATOH7_MA1468.1 10 bp overlap
Ahr::Arnt 1 dataset
Motif DE_12h DE_12h-AhrArnt_MA0006.2 5 bp overlap
BACH1 1 dataset
ChIP WA01 ENCSR000EBQ.BACH1.WA01 126 bp overlap
BACH2 3 datasets
ChIP B-cell_IL2 GSE102460.BACH2.B-cell_IL2 199 bp overlap
ChIP DOHH2 GSE69558.BACH2.DOHH2 269 bp overlap
ChIP OCI-Ly7 GSE44420.BACH2.OCI-Ly7 213 bp overlap
BATF 1 dataset
ChIP OCI-Ly10 GSE56857.BATF.OCI-Ly10 173 bp overlap
BRD4 2 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 197 bp overlap
ChIP Mutu-1_vehicle GSE84213.BRD4.Mutu-1_vehicle 97 bp overlap
Bach1::Mafk 1 dataset
Motif DE_12h DE_12h-Bach1Mafk_MA0591.2 12 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 224 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 282 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 373 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 124 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 368 bp overlap
Dux 2 datasets
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
Motif ES_0h ES_0h-Dux_MA0611.3 11 bp overlap
EP300 4 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 153 bp overlap
ChIP hESC GSE17917.EP300.hESC 295 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 216 bp overlap
ChIP neural cell ENCFF442QNK 317 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 91 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FERD3L 1 dataset
Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 162 bp overlap
IRF4 2 datasets
ChIP OCI-Ly10 GSE142493.IRF4.OCI-Ly10 226 bp overlap
ChIP OCI-Ly3 GSE142493.IRF4.OCI-Ly3 205 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 210 bp overlap
JUND 2 datasets
ChIP H1 ENCFF468JZD 222 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 111 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_12h DE_12h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
ChIP WA01 ENCSR000EBS.MAFK.WA01 123 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MYF6 1 dataset
Motif DE_12h DE_12h-MYF6_MA0667.1 10 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 253 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 144 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 373 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 361 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 152 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 350 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 373 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 373 bp overlap
ChIP hESC GSE18292.NANOG.hESC 205 bp overlap
NEUROD1 6 datasets
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 167 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 170 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 153 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 109 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 155 bp overlap
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
NEUROG2 2 datasets
Motif DE_12h DE_12h-NEUROG2_MA0669.1 10 bp overlap
Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap
NFE2 2 datasets
ChIP K-562 ENCSR552YGL.NFE2.K-562 182 bp overlap
ChIP K562 ENCFF047YKA 273 bp overlap
Neurod2 1 dataset
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 177 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PKNOX1 2 datasets
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 240 bp overlap
PKNOX2 1 dataset
Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap
POU1F1 2 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 2 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 2 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 3 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 260 bp overlap
POU3F1 2 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 2 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 2 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 2 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU5F1 19 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 253 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 373 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 318 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 373 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 325 bp overlap
ChIP OSvK GSE81899.POU5F1.OSvK 234 bp overlap
ChIP OSvKM GSE81899.POU5F1.OSvKM 206 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 218 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 214 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 294 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 214 bp overlap
ChIP hESC GSE17917.POU5F1.hESC 130 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 164 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 354 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 373 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 227 bp overlap
POU5F1B 2 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 373 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 164 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 373 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 182 bp overlap
SIN3A 2 datasets
ChIP WA01 ENCSR000EBO.SIN3A.WA01 200 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 119 bp overlap
SMAD2 1 dataset
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 239 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 293 bp overlap
SMARCA4 6 datasets
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 247 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 222 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 310 bp overlap
ChIP WA09 GSE105028.SMARCA4.WA09 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 364 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 112 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 303 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 348 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 245 bp overlap
SOX2 15 datasets
ChIP H9 GSE46837.SOX2.H9 157 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 373 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 236 bp overlap
ChIP NPC GSE122631.SOX2.NPC 274 bp overlap
ChIP OSKM GSE81899.SOX2.OSKM 235 bp overlap
ChIP OSvK GSE81899.SOX2.OSvK 235 bp overlap
ChIP OSvKM GSE81899.SOX2.OSvKM 145 bp overlap
ChIP hESC GSE69479.SOX2.hESC 229 bp overlap
ChIP hESC GSE18292.SOX2.hESC 107 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 282 bp overlap
ChIP hiPSC GSE67282.SOX2.hiPSC 215 bp overlap
ChIP hiPSC_3s2 GSE81899.SOX2.hiPSC_3s2 300 bp overlap
ChIP hiPSC_INHI GSE67282.SOX2.hiPSC_INHI 225 bp overlap
ChIP hiPSC_KDP53 GSE67282.SOX2.hiPSC_KDP53 258 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 239 bp overlap
SOX3 1 dataset
ChIP NPC GSE122631.SOX3.NPC 279 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 139 bp overlap
SREBF2 1 dataset
Motif DE_12h DE_12h-SREBF2_MA0596.1 10 bp overlap
TAL1::TCF3 1 dataset
Motif DE_12h DE_12h-TAL1TCF3_MA0091.2 10 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 242 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 174 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 241 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
TGIF1 1 dataset
Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap
TGIF2 1 dataset
Motif DE_12h DE_12h-TGIF2_MA0797.1 12 bp overlap
TGIF2LX 1 dataset
Motif DE_12h DE_12h-TGIF2LX_MA1571.1 12 bp overlap
TGIF2LY 1 dataset
Motif DE_12h DE_12h-TGIF2LY_MA1572.1 12 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 360 bp overlap
TWIST1 1 dataset
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Tcf21 1 dataset
Motif DE_12h DE_12h-Tcf21_MA0832.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 157 bp overlap
ZBTB18 1 dataset
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF675 2 datasets
Motif DE_12h DE_12h-ZNF675_MA1714.2 19 bp overlap
Motif ES_0h ES_0h-ZNF675_MA1714.2 19 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Huangfu Lab · Publications · Resources · Contact