chr6 : 10,962,959 10,963,396
437 bp 59 TFs 1 linked gene
This 437 bp open chromatin element is linked to SYCP2L and is bound by 59 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
SYCP2L at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:10,957,959 – 10,968,396
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP GM12878 ENCSR000BQK.ATF2.GM12878 74 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 229 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 227 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCSR517QHU.BHLHE40.GM12878 108 bp overlap
ChIP IMR-90 ENCFF312JYK 120 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 110 bp overlap
BRD4 5 datasets
ChIP GM15850_PA1_JQ1 GSE99402.BRD4.GM15850_PA1_JQ1 143 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 137 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 54 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 138 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 58 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 212 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 225 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 98 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 136 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 74 bp overlap
CREBBP 1 dataset
ChIP fibroblast_proliferating GSE106146.CREBBP.fibroblast_proliferating 126 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 321 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 141 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 172 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 318 bp overlap
EP300 3 datasets
ChIP SK-N-SH ENCFF451CNG 61 bp overlap
ChIP SK-N-SH ENCFF829RWA 120 bp overlap
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 151 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 173 bp overlap
FOS 1 dataset
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 63 bp overlap
FOSL2 4 datasets
ChIP A549 ENCFF195CES 67 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 110 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 144 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 55 bp overlap
FOXA1 1 dataset
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 128 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 437 bp overlap
ChIP DE DE-FOXA2-2 437 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 80 bp overlap
FOXL2 2 datasets
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 343 bp overlap
ChIP SVOG-3e_DOX-WT GSE126171.FOXL2.SVOG-3e_DOX-WT 174 bp overlap
FOXM1 2 datasets
ChIP GM12878 ENCFF264DJE 222 bp overlap
ChIP GM12878 ENCSR000BRU.FOXM1.GM12878 75 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 247 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 214 bp overlap
GATA4 4 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 174 bp overlap
ChIP DE DE-GATA4-1 437 bp overlap
ChIP DE DE-GATA4-2 437 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 342 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 437 bp overlap
ChIP DE DE-GATA6-2 437 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 437 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 437 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 383 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 437 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 437 bp overlap
ChIP foregut GSE117136.GATA6.foregut 259 bp overlap
JUN 1 dataset
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 343 bp overlap
JUNB 2 datasets
ChIP GM12878 ENCFF667EJQ 142 bp overlap
ChIP GM12878 ENCSR897MMC.JUNB.GM12878 114 bp overlap
MED1 3 datasets
ChIP LNCaP_Veh GSE125245.MED1.LNCaP_Veh 103 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 176 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 186 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 184 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 414 bp overlap
NANOG 8 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 413 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 266 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 437 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 428 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 437 bp overlap
ChIP hESC GSE18292.NANOG.hESC 192 bp overlap
ChIP hESC GSE20650.NANOG.hESC 236 bp overlap
NFIC 1 dataset
ChIP GM12878 ENCSR000BRN.NFIC.GM12878 116 bp overlap
NFKB1 2 datasets
ChIP CD4-pos GSE126505.NFKB1.CD4-pos 101 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 138 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 245 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 219 bp overlap
NR3C1 8 datasets
ChIP BEAS-2B_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_TNF-DEX_IA1 166 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 359 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 87 bp overlap
ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 138 bp overlap
ChIP BEAS-2B_shNR3C1_TNF_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF_IA1 400 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.NR3C1.HeLa-B2_TA_TNFA 69 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 72 bp overlap
ChIP IMR-90_GLUCC ERP007081.NR3C1.IMR-90_GLUCC 96 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 99 bp overlap
POU5F1 6 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 117 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 389 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 338 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 133 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 382 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 333 bp overlap
RELA 40 datasets
ChIP 786-O GSE109953.RELA.786-O 343 bp overlap
ChIP AC16 GSE51169.RELA.AC16 55 bp overlap
ChIP AC16_TNFA GSE51169.RELA.AC16_TNFA 217 bp overlap
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 181 bp overlap
ChIP Detroit-562_Pam2CSK4 GSE91018.RELA.Detroit-562_Pam2CSK4 193 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 235 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 214 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 193 bp overlap
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 351 bp overlap
ChIP GM12878 ENCSR000EAG.RELA.GM12878 93 bp overlap
ChIP GM12891 ENCSR000EAI.RELA.GM12891 50 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 93 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 123 bp overlap
ChIP HeLa-B2_GRKD_TA_TNFA GSE24518.RELA.HeLa-B2_GRKD_TA_TNFA 109 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 125 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 171 bp overlap
ChIP HeLa_WT-1H GSE116284.RELA.HeLa_WT-1H 129 bp overlap
ChIP IMR-90_TNF GSE43070.RELA.IMR-90_TNF 378 bp overlap
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 337 bp overlap
ChIP SW480_16h_TNFa GSE102796.RELA.SW480_16h_TNFa 183 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 103 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 197 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 116 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 114 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 69 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 173 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 153 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 120 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 111 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 105 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 141 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 60 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 106 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 50 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 69 bp overlap
ChIP mammary-epithelial-cell GSE71069.RELA.mammary-epithelial-cell 288 bp overlap
ChIP mammary-epithelial-cell_EGF GSE71069.RELA.mammary-epithelial-cell_EGF 355 bp overlap
ChIP mammary-epithelial-cell_IL1 GSE71069.RELA.mammary-epithelial-cell_IL1 207 bp overlap
RELB 3 datasets
ChIP GM12878 ENCFF217ADF 215 bp overlap
ChIP GM12878 ENCFF217ADF 414 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 149 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 189 bp overlap
SMAD2-3 5 datasets
ChIP HGrC1_C134W-TGF GSE138496.SMAD2-3.HGrC1_C134W-TGF 357 bp overlap
ChIP HGrC1_C134W-TGF_SMAD4-KO GSE138496.SMAD2-3.HGrC1_C134W-TGF_SMAD4-KO 93 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 437 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 374 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 358 bp overlap
SMAD4 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.SMAD4.HGrC1_C134W-TGF 178 bp overlap
SMARCA2 6 datasets
ChIP NPC_AM GSE122631.SMARCA2.NPC_AM 194 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 103 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 79 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 151 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 437 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 89 bp overlap
SMARCA4 2 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 78 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 104 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast GSE131711.SMARCB1.proliferating-human-fibroblast 156 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 161 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 161 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 161 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 95 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 283 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 110 bp overlap
STAT3 2 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 158 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 58 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 216 bp overlap
TAL1 1 dataset
ChIP PRIMA2 GSE33850.TAL1.PRIMA2 229 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 56 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 295 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 72 bp overlap
TEAD4 1 dataset
ChIP SK-N-SH ENCFF754TJT 89 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 94 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 285 bp overlap