chr6 : 5,994,270 5,995,166
896 bp 57 TFs 1 linked gene
This 896 bp open chromatin element is linked to NRN1 and is bound by 57 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
NRN1 8.9 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:5,989,270 – 6,000,166
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
57 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 554 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 230 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 357 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 661 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 152 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 653 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 895 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 895 bp overlap
BRD4 9 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 343 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 294 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 574 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 155 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 257 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 140 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 241 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 248 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 295 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 139 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 400 bp overlap
CTCF 77 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 250 bp overlap
ChIP A673 ENCFF123WOM 441 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 238 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 378 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 148 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 301 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 455 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 223 bp overlap
ChIP GM06990 ENCFF471OQT 297 bp overlap
ChIP GM06990 ENCSR000DQW.CTCF.GM06990 198 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 271 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 259 bp overlap
ChIP GM12864 ENCFF357DQE 285 bp overlap
ChIP GM12864 ENCSR000DRB.CTCF.GM12864 128 bp overlap
ChIP GM12866 ENCSR000DRF.CTCF.GM12866 100 bp overlap
ChIP GM12868 ENCSR000DRI.CTCF.GM12868 169 bp overlap
ChIP GM12869 ENCSR000DRJ.CTCF.GM12869 163 bp overlap
ChIP GM12873 ENCFF711LOS 285 bp overlap
ChIP GM12875 ENCSR000DRU.CTCF.GM12875 110 bp overlap
ChIP GM12878 ENCFF511URZ 205 bp overlap
ChIP GM12878 ENCSR000DKV.CTCF.GM12878 168 bp overlap
ChIP GM12878 ENCSR000DZN.CTCF.GM12878 129 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 231 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 169 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 215 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 480 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 239 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 211 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 105 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 130 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 122 bp overlap
ChIP K-562_12040 GSE131349.CTCF.K-562_12040 135 bp overlap
ChIP K-562_13004 GSE131349.CTCF.K-562_13004 148 bp overlap
ChIP K-562_13189 GSE131349.CTCF.K-562_13189 113 bp overlap
ChIP K-562_14259 GSE131349.CTCF.K-562_14259 119 bp overlap
ChIP K-562_14376 GSE131349.CTCF.K-562_14376 128 bp overlap
ChIP K-562_15173 GSE131349.CTCF.K-562_15173 108 bp overlap
ChIP K-562_15776 GSE131349.CTCF.K-562_15776 153 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 160 bp overlap
ChIP K-562_8005 GSE131349.CTCF.K-562_8005 111 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 113 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 323 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP KARPAS422 ENCSR113REG.CTCF.KARPAS422 460 bp overlap
ChIP Loucy ENCFF359TVQ 465 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 338 bp overlap
ChIP OCI-LY1 ENCFF455ESK 130 bp overlap
ChIP OCI-LY7 ENCFF086AXQ 517 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 566 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 332 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 261 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 561 bp overlap
ChIP SU-DHL-6 ENCFF116KKR 561 bp overlap
ChIP SU-DHL-6 ENCSR125DKL.CTCF.SU-DHL-6 333 bp overlap
ChIP TALL-1 GSE115893.CTCF.TALL-1 234 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 118 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 132 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 669 bp overlap
ChIP activated CD4-positive, alpha-beta T cell ENCFF095PZX 705 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 618 bp overlap
ChIP astrocyte of the spinal cord ENCFF213GKL 261 bp overlap
ChIP bonchial_epithelial ENCSR000DXI.CTCF.bonchial_epithelial 110 bp overlap
ChIP cardiac-muscle ENCSR713SXF.CTCF.cardiac-muscle 226 bp overlap
ChIP endodermal cell ENCFF471YCZ 461 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 169 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 208 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 166 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 456 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 157 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 169 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 167 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 334 bp overlap
ChIP plasmablast GSE142493.CTCF.plasmablast 139 bp overlap
CTCFL 2 datasets
ChIP K-562 ENCSR000BNK.CTCFL.K-562 126 bp overlap
ChIP K562 ENCFF883NXC 171 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 271 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 298 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 213 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 69 bp overlap
ETS1 3 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 367 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 118 bp overlap
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 208 bp overlap
EZH2 18 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 609 bp overlap
ChIP B-cell ENCSR000AUZ.EZH2.B-cell 685 bp overlap
ChIP GM12878 ENCFF635TDF 158 bp overlap
ChIP GM23338 ENCFF613YON 237 bp overlap
ChIP GM23338 ENCFF613YON 205 bp overlap
ChIP GM23338 ENCFF886DXX 301 bp overlap
ChIP H1 ENCFF232NZA 896 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 172 bp overlap
ChIP astrocyte ENCFF365JTP 378 bp overlap
ChIP hepatocyte ENCFF118DKH 289 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 407 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 445 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 163 bp overlap
ChIP neural ENCSR511CUH.EZH2.neural 611 bp overlap
ChIP neural progenitor cell ENCFF018MKA 896 bp overlap
ChIP neural progenitor cell ENCFF472NFV 896 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 203 bp overlap
FLI1 1 dataset
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 369 bp overlap
GABPA 2 datasets
ChIP HepG2 ENCFF467OEO 301 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 187 bp overlap
GATA2 1 dataset
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 277 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 648 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 772 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 896 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 632 bp overlap
JARID2 5 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 896 bp overlap
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 261 bp overlap
ChIP MRC-5_IPS25 GSE48516.JARID2.MRC-5_IPS25 613 bp overlap
ChIP UTEIPS11 GSE48516.JARID2.UTEIPS11 716 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 896 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 728 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 484 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 896 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 211 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 438 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 896 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 474 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 896 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 896 bp overlap
KDM4A 5 datasets
ChIP H1 ENCFF078LED 259 bp overlap
ChIP H1 ENCFF078LED 621 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 100 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 571 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 171 bp overlap
KMT2A 1 dataset
ChIP CCRF-CEM GSE83671.KMT2A.CCRF-CEM 369 bp overlap
MAF1 1 dataset
ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 163 bp overlap
MAFF 1 dataset
ChIP HepG2 ENCFF452YUT 218 bp overlap
MAFK 6 datasets
ChIP A549 ENCFF371EPR 258 bp overlap
ChIP H1 ENCFF854XWE 225 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 174 bp overlap
ChIP HepG2 ENCFF743ZOF 214 bp overlap
ChIP HepG2 ENCFF767LDG 216 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 146 bp overlap
MTF2 1 dataset
ChIP DU145_SH4 GSE135623.MTF2.DU145_SH4 95 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 896 bp overlap
NELFE 1 dataset
ChIP K-562_NHS GSE112379.NELFE.K-562_NHS 189 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 258 bp overlap
POU5F1 6 datasets
ChIP BG03 GSE21614.POU5F1.BG03 166 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 772 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 399 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 159 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 218 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 104 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 797 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 126 bp overlap
PTBP1 2 datasets
ChIP Hep-G2 ENCSR156APP.PTBP1.Hep-G2 258 bp overlap
ChIP Hep-G2 GSE120104.PTBP1.Hep-G2 225 bp overlap
RAD21 5 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 136 bp overlap
ChIP K562 ENCFF169SQI 171 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 192 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 160 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 310 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 107 bp overlap
ChIP H1 ENCFF239FFS 209 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 445 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 219 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 220 bp overlap
SIRT6 2 datasets
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 269 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 294 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 896 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 896 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 724 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 861 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 881 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 569 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 558 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 264 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 235 bp overlap
ChIP hESC GSE29422.SMAD3.hESC 152 bp overlap
SMARCA4 6 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 332 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 420 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 181 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 896 bp overlap
ChIP MCF-10A GSE74716.SMARCA4.MCF-10A 340 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 302 bp overlap
STAG2 2 datasets
ChIP HL-60 GSE131577.STAG2.HL-60 110 bp overlap
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 133 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 267 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 371 bp overlap
ChIP H1 ENCFF881NFR 896 bp overlap
ChIP Karpas-422_CPI360-D8 GSE134136.SUZ12.Karpas-422_CPI360-D8 207 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 896 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 484 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 208 bp overlap
TAL1 1 dataset
ChIP PRIMA5 GSE33850.TAL1.PRIMA5 143 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 136 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 389 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 156 bp overlap
ZBTB2 1 dataset
ChIP GM12878 GSE97661.ZBTB2.GM12878 107 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 308 bp overlap