chr5 : 161,562,388 – 161,563,536

1,148 bp 81 TFs 0 linked genes

This 1.1 kb open chromatin element has no linked target genes and is bound by 81 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

BARX2 1 dataset

Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap

BCL11A 1 dataset

ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 133 bp overlap

CEBPA 2 datasets

ChIP THP-1_1-25D_8h GSE124032.CEBPA.THP-1_1-25D_8h 190 bp overlap

ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 138 bp overlap

CREB1 1 dataset

Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap

DAXX 1 dataset

ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 199 bp overlap

DUX4 1 dataset

Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap

EHF 1 dataset

Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap

ELF1 1 dataset

Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap

ELF3 1 dataset

Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 219 bp overlap

EP300 1 dataset

ChIP GM12878 ENCFF039QRE 351 bp overlap

ERF::FOXI1 1 dataset

Motif DE_12h DE_12h-ERFFOXI1_MA1935.2 10 bp overlap

ESR1 1 dataset

ChIP T-47D ENCSR000BKN.ESR1.T-47D 120 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV2FOXI1_MA1942.2 11 bp overlap

ETV5::FOXI1 1 dataset

Motif DE_12h DE_12h-ETV5FOXI1_MA1946.2 12 bp overlap

ETV5::FOXO1 1 dataset

Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap

ETV7 1 dataset

Motif DE_12h DE_12h-ETV7_MA1708.2 9 bp overlap

EZH2 1 dataset

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 67 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

Erg 1 dataset

Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap

FLI1 2 datasets

ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 284 bp overlap

ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 189 bp overlap

FLI1::FOXI1 1 dataset

Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap

FOSL1::JUND 1 dataset

Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap

FOXD3 1 dataset

Motif DE_12h DE_12h-FOXD3_MA0041.3 14 bp overlap

FOXO1::ELF1 1 dataset

Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap

FOXO1::ELK1 1 dataset

Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap

GABPA 1 dataset

Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap

GATA6 6 datasets

ChIP DE_D1 S09-DE-d1-GATA6-exp1 462 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 591 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 616 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 482 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 648 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 602 bp overlap

GFI1 1 dataset

Motif DE_12h DE_12h-GFI1_MA0038.3 11 bp overlap

Gfi1B 1 dataset

Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap

Hic1 1 dataset

Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap

IKZF2 3 datasets

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

ChIP GM12878 ENCFF238LYK 597 bp overlap

ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 226 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

JUN 4 datasets

ChIP DE_D1 S08-DE-d1-JUN-exp1 371 bp overlap

ChIP DE_D1 S40-DE-d1-JUN-exp2 414 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 267 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 473 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

MAZ 1 dataset

Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap

MEIS1 3 datasets

ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 254 bp overlap

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

MLLT1 1 dataset

ChIP MCF-7 ENCSR427BBI.MLLT1.MCF-7 223 bp overlap

MTA2 1 dataset

ChIP GM12878 ENCSR293QAR.MTA2.GM12878 291 bp overlap

NANOG 1 dataset

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 264 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

PAX5 2 datasets

ChIP GM12878 ENCSR000BHJ.PAX5.GM12878 141 bp overlap

ChIP GM12878 ENCSR000BHD.PAX5.GM12878 107 bp overlap

PHOX2B 1 dataset

Motif DE_12h DE_12h-PHOX2B_MA0681.3 12 bp overlap

PKNOX1 1 dataset

Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU5F1 1 dataset

ChIP DE_D1 DED1-OCT4_Batch_II 328 bp overlap

POU5F1_M 1 dataset

ChIP DE_D1 DED1-OCT4-M_Batch_II 266 bp overlap

PRDM9 1 dataset

Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap

Pax7 1 dataset

Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap

RUNX1 1 dataset

ChIP THP-1 GSE79899.RUNX1.THP-1 204 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 597 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 625 bp overlap

SMAD2_3 4 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 344 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 514 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 434 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 403 bp overlap

SMAD3 1 dataset

ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 137 bp overlap

SMAD4 1 dataset

ChIP HGrC1_WT-TGF GSE138496.SMAD4.HGrC1_WT-TGF 241 bp overlap

SMARCA4 1 dataset

ChIP NSC GSE125033.SMARCA4.NSC 175 bp overlap

SP1 1 dataset

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

SP4 1 dataset

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SP8 1 dataset

Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap

SPI1 2 datasets

ChIP GM12878 ENCFF134LCP 297 bp overlap

ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 145 bp overlap

SPIB 2 datasets

Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap

Spi1 1 dataset

Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap

T 1 dataset

ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 358 bp overlap

TBX20 1 dataset

Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap

TBX21 2 datasets

ChIP GM12878 ENCFF951HUW 485 bp overlap

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 285 bp overlap

TCF7L1 1 dataset

Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap

VENTX 1 dataset

Motif DE_12h DE_12h-VENTX_MA0724.1 9 bp overlap

ZKSCAN5 2 datasets

Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap

ZNF140 1 dataset

Motif DE_12h DE_12h-ZNF140_MA1589.2 19 bp overlap

ZNF148 1 dataset

Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap

ZNF175 1 dataset

Motif DE_12h DE_12h-ZNF175_MA2332.1 9 bp overlap

ZNF263 1 dataset

Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap

ZNF281 1 dataset

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF582 1 dataset

Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap

ZNF740 1 dataset

Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap