chr5 : 81,234,810 – 81,235,316

506 bp 81 TFs 1 linked gene

This 506 bp open chromatin element is linked to CKMT2 and is bound by 81 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CKMT2		1.5 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

81 transcription factors

ARID5B 1 dataset

ChIP Jurkat GSE97512.ARID5B.Jurkat 229 bp overlap

BCL6 3 datasets

ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 208 bp overlap

ChIP RS4-11 GSE59541.BCL6.RS4-11 237 bp overlap

ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 252 bp overlap

BRD4 5 datasets

ChIP Jurkat GSE83777.BRD4.Jurkat 309 bp overlap

ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 500 bp overlap

ChIP SEM GSE83671.BRD4.SEM 506 bp overlap

ChIP SW480 GSE110473.BRD4.SW480 506 bp overlap

ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 506 bp overlap

CBFA2T2 1 dataset

ChIP NCCIT GSE71675.CBFA2T2.NCCIT 238 bp overlap

CHD4 1 dataset

ChIP 501-mel GSE134848.CHD4.501-mel 192 bp overlap

DNMT3B 1 dataset

ChIP HUES-8 GSE99346.DNMT3B.HUES-8 221 bp overlap

EBF1 1 dataset

ChIP NALM-6 GSE126300.EBF1.NALM-6 323 bp overlap

EBF3 1 dataset

Motif DE_12h DE_12h-EBF3_MA1637.2 9 bp overlap

ERG 1 dataset

ChIP SEM GSE117864.ERG.SEM 380 bp overlap

ESR1 4 datasets

Motif DE_12h DE_12h-ESR1_MA0112.4 15 bp overlap

ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 221 bp overlap

ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 288 bp overlap

ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 257 bp overlap

ESR1_Y537N 1 dataset

ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 142 bp overlap

ESR2 1 dataset

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

ESRRG 1 dataset

ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 506 bp overlap

ETS1 2 datasets

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 454 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 506 bp overlap

ETV1 1 dataset

Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

Ebf2 1 dataset

Motif DE_12h DE_12h-Ebf2_MA1604.2 9 bp overlap

FLI1 4 datasets

ChIP CTV-1_DSG GSE128835.FLI1.CTV-1_DSG 377 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 428 bp overlap

ChIP SEM GSE117864.FLI1.SEM 247 bp overlap

ChIP SKNO-1 GSE23730.FLI1.SKNO-1 261 bp overlap

GATA2 1 dataset

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap

HNF4A 1 dataset

ChIP LoVo_PHASES GSE51290.HNF4A.LoVo_PHASES 270 bp overlap

Hnf1A 1 dataset

Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap

IKZF1 3 datasets

ChIP BCR-ABL1 GSE58825.IKZF1.BCR-ABL1 334 bp overlap

ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 473 bp overlap

ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 465 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IKZF3 1 dataset

ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 285 bp overlap

Ikzf3 1 dataset

Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap

KLF1 1 dataset

Motif DE_12h DE_12h-KLF1_MA0493.3 8 bp overlap

KLF10 1 dataset

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

KLF12 1 dataset

Motif DE_12h DE_12h-KLF12_MA0742.2 9 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF15 1 dataset

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

KLF2 1 dataset

Motif DE_12h DE_12h-KLF2_MA1515.2 8 bp overlap

KLF4 1 dataset

Motif DE_12h DE_12h-KLF4_MA0039.5 8 bp overlap

KLF5 1 dataset

Motif DE_12h DE_12h-KLF5_MA0599.1 10 bp overlap

KLF6 1 dataset

Motif DE_12h DE_12h-KLF6_MA1517.2 9 bp overlap

KLF7 1 dataset

Motif DE_12h DE_12h-KLF7_MA1959.2 8 bp overlap

KMT2B-D 1 dataset

ChIP SW480 GSE115985.KMT2B-D.SW480 506 bp overlap

Lef1 1 dataset

Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap

MED 1 dataset

ChIP SEM GSE83671.MED.SEM 505 bp overlap

MTA2 1 dataset

ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 215 bp overlap

MYB 6 datasets

ChIP DU528 GSE94000.MYB.DU528 420 bp overlap

ChIP Jurkat GSE59657.MYB.Jurkat 358 bp overlap

ChIP MOLT-3 GSE59657.MYB.MOLT-3 250 bp overlap

ChIP PF-382 GSE94000.MYB.PF-382 167 bp overlap

ChIP SEM GSE117864.MYB.SEM 297 bp overlap

ChIP THP-1 GSE90769.MYB.THP-1 189 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 385 bp overlap

NKX2-3 1 dataset

Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap

NKX2-4 2 datasets

Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap

NKX2-8 2 datasets

Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap

NR2C1 1 dataset

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

NR2C2 1 dataset

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

NR3C1 2 datasets

ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 283 bp overlap

ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 260 bp overlap

Nr1H2 1 dataset

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 1 dataset

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 1 dataset

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

PAX5 1 dataset

ChIP NALM-6 GSE126300.PAX5.NALM-6 293 bp overlap

PBX1 1 dataset

ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 447 bp overlap

POLR2A 3 datasets

ChIP SK-N-MC ENCFF088IVG 488 bp overlap

ChIP SK-N-MC ENCFF088IVG 289 bp overlap

ChIP heart left ventricle ENCFF591JWH 288 bp overlap

PPARG 1 dataset

Motif DE_12h DE_12h-PPARG_MA0066.2 19 bp overlap

PROX1 1 dataset

ChIP SW480 GSE60390.PROX1.SW480 111 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

RUNX1 4 datasets

ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 213 bp overlap

ChIP Jurkat GSE29180.RUNX1.Jurkat 152 bp overlap

ChIP Jurkat GSE76181.RUNX1.Jurkat 234 bp overlap

ChIP NALM-6 GSE126300.RUNX1.NALM-6 406 bp overlap

SMAD2-3 3 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 394 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 359 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 328 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 296 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 284 bp overlap

SMARCA4 8 datasets

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 149 bp overlap

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 101 bp overlap

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 506 bp overlap

ChIP CTV-1_DSG_SPI1-mut GSE128835.SMARCA4.CTV-1_DSG_SPI1-mut 506 bp overlap

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 396 bp overlap

ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 476 bp overlap

ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 227 bp overlap

ChIP CTV-1_delQ GSE128835.SMARCA4.CTV-1_delQ 409 bp overlap

SMARCC1 1 dataset

ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 173 bp overlap

SP1 1 dataset

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

SP2 1 dataset

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

SP4 1 dataset

Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap

SP5 1 dataset

Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap

SP9 1 dataset

Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap

SPI1 2 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 408 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 308 bp overlap

STAT1 1 dataset

Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap

STAT3 1 dataset

Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap

Stat4 1 dataset

Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap

TAL1 1 dataset

ChIP MOLT-3 GSE59657.TAL1.MOLT-3 157 bp overlap

TCF3 1 dataset

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 415 bp overlap

TCF7L2 1 dataset

Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap

TP53 2 datasets

ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 170 bp overlap

ChIP SW480_shp53_16h_TNF-a GSE115985.TP53.SW480_shp53_16h_TNF-a 393 bp overlap

YY1 1 dataset

ChIP ALL GSE145549.YY1.ALL 419 bp overlap

ZFP42 1 dataset

Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap

ZNF143 2 datasets

ChIP Hep-G2 ENCSR080UEM.ZNF143.Hep-G2 149 bp overlap

ChIP MCF-7 GSE76454.ZNF143.MCF-7 139 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF528 1 dataset

Motif DE_12h DE_12h-ZNF528_MA1597.1 17 bp overlap

ZNF652 1 dataset

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap