chr5 : 17,802,343 – 17,802,532
189 bp 84 TFs 1 linked gene
This 189 bp open chromatin element is linked to LINC02223 and is bound by 84 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC02223 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:17,797,343 – 17,807,532
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP NGP GSE134626.ARID1A.NGP 189 bp overlap
ASCL1 1 dataset
Motif DE_12h DE_12h-ASCL1_MA1100.3 8 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 189 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 189 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BRD4 10 datasets
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 189 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 152 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 189 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 189 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 189 bp overlap
ChIP NCI-H2171 GSE101821.BRD4.NCI-H2171 147 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 179 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 173 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 158 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 189 bp overlap
Bhlha15 1 dataset
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPB 2 datasets
ChIP Ishikawa ENCFF010USJ 163 bp overlap
ChIP Ishikawa ENCSR000BTT.CEBPB.Ishikawa 179 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 189 bp overlap
CHD7 2 datasets
ChIP hiPSC_AF22_abD3F5 GSE108506.CHD7.hiPSC_AF22_abD3F5 177 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 189 bp overlap
EP300 3 datasets
ChIP Ishikawa ENCFF364ZWT 189 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 189 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 189 bp overlap
ERF::FIGLA 1 dataset
Motif DE_12h DE_12h-ERFFIGLA_MA1934.2 13 bp overlap
ESR1 14 datasets
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 189 bp overlap
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 172 bp overlap
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 159 bp overlap
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 189 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 189 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 189 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 189 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 189 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 189 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 183 bp overlap
ChIP Ishikawa_M1-66 GSE147141.ESR1.Ishikawa_M1-66 189 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 146 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 189 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 136 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_12h DE_12h-ETV5FIGLA_MA1945.2 14 bp overlap
EZH2 2 datasets
ChIP T-REx-293_K27WT_12h GSE118954.EZH2.T-REx-293_K27WT_12h 189 bp overlap
ChIP T-REx-293_K27WT_72h GSE118954.EZH2.T-REx-293_K27WT_72h 65 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 147 bp overlap
FLI1 2 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 158 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 119 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 189 bp overlap
FOXM1 2 datasets
ChIP Ishikawa ENCFF578VDD 131 bp overlap
ChIP Ishikawa ENCSR000BUS.FOXM1.Ishikawa 189 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 152 bp overlap
HDAC2 1 dataset
ChIP H1 ENCFF939VKA 183 bp overlap
MAF 1 dataset
Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap
MAFA 1 dataset
Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 189 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 175 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 189 bp overlap
MXI1 1 dataset
ChIP neural cell ENCFF623HQN 189 bp overlap
MYCN 1 dataset
ChIP CHP-134 GSE129588.MYCN.CHP-134 139 bp overlap
MYF5 1 dataset
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
MYOD1 1 dataset
Motif DE_12h DE_12h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 189 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 162 bp overlap
ChIP hESC GSE18292.NANOG.hESC 139 bp overlap
NFIC 2 datasets
ChIP Ishikawa ENCFF029AAD 189 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 189 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NHLH2 1 dataset
Motif DE_12h DE_12h-NHLH2_MA1529.2 16 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 168 bp overlap
NR3C1 3 datasets
ChIP HeLa-B2_GRKD_DMSO GSE24518.NR3C1.HeLa-B2_GRKD_DMSO 136 bp overlap
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 148 bp overlap
ChIP Ishikawa_Dex GSE109891.NR3C1.Ishikawa_Dex 103 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 167 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 189 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 4 datasets
ChIP IMR-5 GSE78957.RAD21.IMR-5 150 bp overlap
ChIP Ishikawa ENCFF570JVV 163 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 189 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 189 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 189 bp overlap
RBPJ 1 dataset
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 139 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 189 bp overlap
ChIP neural cell ENCFF882LXX 152 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Motif ES_0h ES_0h-Rarg_MA0860.1 17 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 189 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 189 bp overlap
SMARCA4 11 datasets
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 189 bp overlap
ChIP A-549_AG15724 GSE132290.SMARCA4.A-549_AG15724 84 bp overlap
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 189 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 101 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 189 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 189 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 142 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 165 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 189 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 189 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 189 bp overlap
SMARCC1 1 dataset
ChIP hiPSC GSE124903.SMARCC1.hiPSC 189 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 189 bp overlap
ChIP neural cell ENCFF795YGY 189 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 189 bp overlap
SRF 1 dataset
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 127 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TCF12 4 datasets
ChIP H1 ENCFF203EBH 160 bp overlap
ChIP Ishikawa ENCFF467DDW 189 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 189 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 131 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 189 bp overlap
TEAD4 2 datasets
ChIP Ishikawa ENCFF772OTG 189 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 189 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_12h DE_12h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_12h DE_12h-TFAP4FLI1_MA1967.2 14 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
USF1 1 dataset
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 131 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 166 bp overlap
ZBTB24 2 datasets
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB24_MA2330.1 10 bp overlap
ZIC1 2 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZIC4 2 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif ES_0h ES_0h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif ES_0h ES_0h-ZIC5_MA1584.2 15 bp overlap
ZNF16 2 datasets
Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap
Motif ES_0h ES_0h-ZNF16_MA1654.2 21 bp overlap
ZNF331 2 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif ES_0h ES_0h-ZNF331_MA1726.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 189 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 105 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZSCAN21 1 dataset
Motif DE_12h DE_12h-ZSCAN21_MA2336.1 7 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 2 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
Huangfu Lab · Publications · Resources · Contact