chr4 : 136,484,494 136,485,462
968 bp 91 TFs 0 linked genes
This 968 bp open chromatin element has no linked target genes and is bound by 91 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:136,479,494 – 136,490,462
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP NGP GSE134626.ARID1A.NGP 160 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 401 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.ARID1A.endometrial-epithelial-cells_KO 372 bp overlap
ARID2 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ARID2.MCF-7_parental_4-hydroxytamoxifen 281 bp overlap
Ascl2 1 dataset
Motif DE_60h DE_60h-Ascl2_MA0816.1 10 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 123 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 136 bp overlap
CEBPB 1 dataset
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 118 bp overlap
CHD4 1 dataset
ChIP SCMC GSE155861.CHD4.SCMC 455 bp overlap
CTCF 1 dataset
ChIP prostate ENCSR946MNG.CTCF.prostate 220 bp overlap
DMRTC2 1 dataset
Motif DE_60h DE_60h-DMRTC2_MA1479.2 11 bp overlap
Dux 1 dataset
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
ELF3 1 dataset
ChIP PDAC GSE64557.ELF3.PDAC 392 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 132 bp overlap
ChIP hESC GSE26097.EOMES.hESC 253 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE76893.ESR1.MCF-7 195 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 207 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 237 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 430 bp overlap
FOXA1 14 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 463 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 355 bp overlap
ChIP LNCaP_UPF1069 GSE114274.FOXA1.LNCaP_UPF1069 63 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 183 bp overlap
ChIP MCF-7 GSE81714.FOXA1.MCF-7 283 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 193 bp overlap
ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 141 bp overlap
ChIP MCF-7_JC4696 GSE126004.FOXA1.MCF-7_JC4696 196 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 309 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 331 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 319 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 156 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 148 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 242 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 463 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 340 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 473 bp overlap
ChIP DE DE-FOXA2-1 874 bp overlap
ChIP DE DE-FOXA2-2 887 bp overlap
FOXC1 1 dataset
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_60h DE_60h-FOXC2_MA0846.2 11 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
FOXH1 1 dataset
Motif DE_60h DE_60h-FOXH1_MA0479.2 8 bp overlap
GATA2 8 datasets
ChIP ESF GSE108408.GATA2.ESF 255 bp overlap
ChIP HUVEC-C GSE109625.GATA2.HUVEC-C 212 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.GATA2.HUVEC-C_VEGF_12h 185 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.GATA2.HUVEC-C_VEGF_1h 232 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.GATA2.HUVEC-C_VEGF_4h 151 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 143 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 441 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 371 bp overlap
GATA3 9 datasets
ChIP A1A3_Brg1KD_Dex GSE112491.GATA3.A1A3_Brg1KD_Dex 198 bp overlap
ChIP MCF-7 ENCFF352QVM 185 bp overlap
ChIP MCF-7 GSE51274.GATA3.MCF-7 284 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 270 bp overlap
ChIP MCF-7_E2 GSE29073.GATA3.MCF-7_E2 164 bp overlap
ChIP MCF-7_E2 GSE40129.GATA3.MCF-7_E2 143 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 156 bp overlap
ChIP SK-N-SH ENCFF040SSB 124 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 191 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 863 bp overlap
ChIP DE DE-GATA4-2 968 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 468 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 308 bp overlap
GATA5 1 dataset
Motif DE_60h DE_60h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-1 784 bp overlap
ChIP DE DE-GATA6-2 947 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 763 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 669 bp overlap
ChIP foregut GSE117136.GATA6.foregut 427 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 273 bp overlap
Gata3 1 dataset
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 96 bp overlap
IRF1 1 dataset
ChIP monocyte_notreatment GSE100381.IRF1.monocyte_notreatment 159 bp overlap
JUN 7 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 354 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 295 bp overlap
ChIP HeLa-S3 ENCFF668QVP 337 bp overlap
ChIP HeLa-S3 ENCSR000EDG.JUN.HeLa-S3 176 bp overlap
ChIP MCF-7_E2 GSE102410.JUN.MCF-7_E2 180 bp overlap
ChIP endothelial cell of umbilical vein ENCFF791BMV 297 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EFA.JUN.endothelial_umbilical-vein 191 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 138 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 277 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 86 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 60 bp overlap
MNT 2 datasets
ChIP Hep-G2 ENCSR261EDU.MNT.Hep-G2 200 bp overlap
ChIP HepG2 ENCFF701PYP 304 bp overlap
MSC 1 dataset
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 331 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 222 bp overlap
MYOG 1 dataset
Motif DE_60h DE_60h-MYOG_MA0500.3 8 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NFIL3 1 dataset
Motif DE_60h DE_60h-NFIL3_MA0025.3 9 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
Olig2 1 dataset
Motif DE_60h DE_60h-Olig2_MA1997.2 6 bp overlap
PAX8 1 dataset
Motif DE_60h DE_60h-PAX8_MA2094.1 16 bp overlap
RARA 1 dataset
Motif DE_60h DE_60h-RARA_MA0730.1 17 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0072.2 11 bp overlap
Rarb 1 dataset
Motif DE_60h DE_60h-Rarb_MA0858.1 17 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 676 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 500 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 670 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 166 bp overlap
SMARCA4 3 datasets
ChIP A-549_AG15677 GSE132290.SMARCA4.A-549_AG15677 99 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 227 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 438 bp overlap
SMARCC1 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 272 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE115602.SMC1A.MCF-7 147 bp overlap
SOX12 1 dataset
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
SOX13 1 dataset
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
SOX14 1 dataset
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 713 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 904 bp overlap
SOX2 1 dataset
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
SOX21 1 dataset
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SOX8 2 datasets
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 351 bp overlap
SOX9 1 dataset
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 217 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 145 bp overlap
ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 214 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 265 bp overlap
Sox1 1 dataset
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 186 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
TRPS1 1 dataset
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tcf12 1 dataset
Motif DE_60h DE_60h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_60h DE_60h-Twist2_MA0633.3 6 bp overlap
YY1AP1 2 datasets
ChIP MCF-7_E2 GSE125594.YY1AP1.MCF-7_E2 347 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 434 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 227 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 206 bp overlap
ZNF382 1 dataset
Motif DE_60h DE_60h-ZNF382_MA1594.1 24 bp overlap
ZNF418 1 dataset
Motif DE_60h DE_60h-ZNF418_MA1980.1 15 bp overlap
ZNF547 1 dataset
Motif DE_60h DE_60h-ZNF547_MA2334.1 13 bp overlap
ZNF677 1 dataset
Motif DE_60h DE_60h-ZNF677_MA2101.1 12 bp overlap
ZNF708 1 dataset
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
ZNF770 1 dataset
Motif DE_60h DE_60h-ZNF770_MA2099.1 8 bp overlap
ZNF816 1 dataset
Motif DE_60h DE_60h-ZNF816_MA1719.2 15 bp overlap