chr4 : 133,156,120 – 133,156,492
372 bp 84 TFs 2 linked genes
This 372 bp open chromatin element is linked to PCDH10 and PCDH10-DT and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PCDH10 6.8 kb Proximal Proximity
PCDH10-DT 7.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:133,151,120 – 133,161,492
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP BIN-67_ctrl GSE117734.ARID2.BIN-67_ctrl 226 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 314 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 304 bp overlap
Arid3b 1 dataset
Motif DE_12h DE_12h-Arid3b_MA0601.2 7 bp overlap
Atf3 1 dataset
Motif DE_12h DE_12h-Atf3_MA1988.2 7 bp overlap
BACH1 1 dataset
Motif DE_12h DE_12h-BACH1_MA1633.2 9 bp overlap
BACH2 1 dataset
Motif DE_12h DE_12h-BACH2_MA1101.3 11 bp overlap
BATF 1 dataset
Motif DE_12h DE_12h-BATF_MA1634.2 7 bp overlap
BATF3 1 dataset
Motif DE_12h DE_12h-BATF3_MA0835.3 7 bp overlap
BATF::JUN 1 dataset
Motif DE_12h DE_12h-BATFJUN_MA0462.3 7 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 207 bp overlap
BNC2 1 dataset
Motif DE_12h DE_12h-BNC2_MA1928.2 7 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 314 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 217 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 159 bp overlap
BRD7 1 dataset
ChIP SUM159PT_JQ1 GSE131097.BRD7.SUM159PT_JQ1 282 bp overlap
CHD1 2 datasets
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 291 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 274 bp overlap
CTCF 23 datasets
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 173 bp overlap
ChIP astrocyte of the cerebellum ENCFF511OCS 285 bp overlap
ChIP astrocyte_cerebellum ENCSR000DSZ.CTCF.astrocyte_cerebellum 163 bp overlap
ChIP brain ENCFF685VRG 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF230SFD 208 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 297 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF235CPK 257 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF258PHG 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF267VHH 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF282ONV 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 354 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF406ZHG 237 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF442YDO 351 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF631JNO 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 347 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF756TDJ 280 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF767LNC 224 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF835ZSJ 372 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF851XUX 306 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 372 bp overlap
CTCF_s 1 dataset
ChIP HeLa-S3_biotin GSE108869.CTCF_s.HeLa-S3_biotin 168 bp overlap
ELF1 2 datasets
ChIP A-549 GSE122203.ELF1.A-549 154 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 232 bp overlap
EP300 2 datasets
ChIP tibial nerve ENCFF346AYA 294 bp overlap
ChIP tibial nerve ENCFF952OPK 223 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA0476.2 8 bp overlap
FOS::JUN 1 dataset
Motif DE_12h DE_12h-FOSJUN_MA0099.4 9 bp overlap
FOS::JUNB 1 dataset
Motif DE_12h DE_12h-FOSJUNB_MA1134.2 9 bp overlap
FOS::JUND 1 dataset
Motif DE_12h DE_12h-FOSJUND_MA1141.2 9 bp overlap
FOSB::JUNB 1 dataset
Motif DE_12h DE_12h-FOSBJUNB_MA1135.2 9 bp overlap
FOSL1 1 dataset
Motif DE_12h DE_12h-FOSL1_MA0477.3 9 bp overlap
FOSL1::JUN 1 dataset
Motif DE_12h DE_12h-FOSL1JUN_MA1128.2 9 bp overlap
FOSL1::JUNB 1 dataset
Motif DE_12h DE_12h-FOSL1JUNB_MA1137.2 9 bp overlap
FOSL1::JUND 1 dataset
Motif DE_12h DE_12h-FOSL1JUND_MA1142.2 8 bp overlap
FOSL2 2 datasets
Motif DE_12h DE_12h-FOSL2_MA0478.2 10 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 184 bp overlap
FOSL2::JUN 1 dataset
Motif DE_12h DE_12h-FOSL2JUN_MA1130.2 9 bp overlap
FOSL2::JUNB 1 dataset
Motif DE_12h DE_12h-FOSL2JUNB_MA1138.2 9 bp overlap
FOSL2::JUND 1 dataset
Motif DE_12h DE_12h-FOSL2JUND_MA1144.2 9 bp overlap
FOXM1 1 dataset
ChIP MDA-MB-231_THIOS GSE40762.FOXM1.MDA-MB-231_THIOS 231 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXA3 1 dataset
Motif DE_12h DE_12h-HOXA3_MA2119.1 7 bp overlap
HOXA4 1 dataset
Motif DE_12h DE_12h-HOXA4_MA1496.2 7 bp overlap
HOXB4 2 datasets
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB9 1 dataset
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 1 dataset
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC4 2 datasets
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD12 1 dataset
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD3 1 dataset
Motif DE_12h DE_12h-HOXD3_MA0912.2 8 bp overlap
HOXD4 2 datasets
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hoxa11 1 dataset
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN::JUNB 1 dataset
Motif DE_12h DE_12h-JUNJUNB_MA1132.2 8 bp overlap
JUNB 1 dataset
Motif DE_12h DE_12h-JUNB_MA0490.3 9 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Jun 1 dataset
Motif DE_12h DE_12h-Jun_MA0489.3 8 bp overlap
KLF9 1 dataset
ChIP GBM1A GSE62211.KLF9.GBM1A 86 bp overlap
KMT2A 1 dataset
ChIP KOPN-8 GSE83671.KMT2A.KOPN-8 257 bp overlap
MED1 1 dataset
ChIP dopaminergic-neuron_Dopamine_neurons GSE93905.MED1.dopaminergic-neuron_Dopamine_neurons 139 bp overlap
MEN1 1 dataset
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 294 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 313 bp overlap
NCOR2 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.NCOR2.B-cell_GERMINAL_CENTER 130 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 237 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NFIA 1 dataset
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 319 bp overlap
PAX3-FOXO1 1 dataset
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 266 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
POLR2A 2 datasets
ChIP H54 ENCFF398BXN 254 bp overlap
ChIP HeLa-S3 ENCFF773DNG 372 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 197 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 142 bp overlap
RBPJ 3 datasets
ChIP GSC8-11 GSE74557.RBPJ.GSC8-11 259 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 329 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 350 bp overlap
REST 1 dataset
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 85 bp overlap
RXRA 2 datasets
ChIP JMSU-1 GSE107734.RXRA.JMSU-1 228 bp overlap
ChIP JMSU-1_RXRA-S427F GSE107734.RXRA.JMSU-1_RXRA-S427F 231 bp overlap
SETDB1 1 dataset
ChIP WN8532 GSE36579.SETDB1.WN8532 171 bp overlap
SMAD2-3 1 dataset
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 182 bp overlap
SMARCA4 2 datasets
ChIP NSC GSE125033.SMARCA4.NSC 166 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 302 bp overlap
SMC1A-B 1 dataset
ChIP TC-32 GSE115250.SMC1A-B.TC-32 247 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 271 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 200 bp overlap
Stat5a 1 dataset
Motif DE_12h DE_12h-Stat5a_MA1624.2 9 bp overlap
TAF1 1 dataset
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 167 bp overlap
TBP 2 datasets
ChIP HeLa-S3 ENCFF715NNJ 372 bp overlap
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 322 bp overlap
ZNF136 1 dataset
Motif DE_12h DE_12h-ZNF136_MA1588.1 15 bp overlap
ZNF558 1 dataset
Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap
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