chr4 : 73,446,081 73,446,217
136 bp 68 TFs 1 linked gene
This 136 bp open chromatin element is linked to AFP and is bound by 68 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
AFP 4.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:73,441,081 – 73,451,217
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
None 1 dataset
ChIP HepG2 ENCFF731CFD 136 bp overlap
AR 1 dataset
ChIP MCF-7 GSE48930.AR.MCF-7 136 bp overlap
ARID1A 1 dataset
ChIP Hep-G2 GSE69566.ARID1A.Hep-G2 136 bp overlap
ARID1B 1 dataset
ChIP Hep-G2 GSE69566.ARID1B.Hep-G2 136 bp overlap
ARID2 1 dataset
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 136 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMSO GSE85096.ARNTL.U2OS_DMSO 135 bp overlap
CREB1 3 datasets
ChIP Hep-G2 ENCSR000BVL.CREB1.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF245CBB 136 bp overlap
ChIP HepG2 ENCFF576ERP 136 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 122 bp overlap
CRY2 1 dataset
ChIP U2OS_DMSO GSE130507.CRY2.U2OS_DMSO 94 bp overlap
CTCF 86 datasets
ChIP 22Rv1 ENCFF466OXN 82 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 67 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 136 bp overlap
ChIP C4-2B ENCFF821XVN 136 bp overlap
ChIP D54 ENCSR000DKN.CTCF.D54 89 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 136 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 125 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 136 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 134 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 136 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 64 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 73 bp overlap
ChIP GM12873 ENCFF711LOS 101 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 97 bp overlap
ChIP HCT-116 ENCSR240PRQ.CTCF.HCT-116 136 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 136 bp overlap
ChIP HCT-116 ENCSR000BSE.CTCF.HCT-116 62 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.CTCF.HCT-116_RAD21-mAC 136 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 136 bp overlap
ChIP HFFc6 ENCFF005CJI 54 bp overlap
ChIP HL-60 GSE131577.CTCF.HL-60 51 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 136 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 136 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 51 bp overlap
ChIP K-562 ENCSR000AKO.CTCF.K-562 107 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 104 bp overlap
ChIP K-562_CRISPRa_N4293 GSE131349.CTCF.K-562_CRISPRa_N4293 116 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 116 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 136 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 65 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 128 bp overlap
ChIP MM1-S ENCSR402IDP.CTCF.MM1-S 136 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 73 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 136 bp overlap
ChIP NPC GSE115407.CTCF.NPC 136 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 87 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 136 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 70 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 136 bp overlap
ChIP Panc1 ENCFF056JQX 69 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 136 bp overlap
ChIP RWPE2 ENCFF911IEE 136 bp overlap
ChIP SEM GSE117864.CTCF.SEM 136 bp overlap
ChIP SH-SY5Y GSE101295.CTCF.SH-SY5Y 101 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 132 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 120 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 96 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 135 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 136 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 136 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 64 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-020m-Flavo-000m 121 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 95 bp overlap
ChIP THP-1_Pam3csk-045m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-045m-Flavo-000m 89 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.CTCF.THP-1_Pam3csk-150m-Flavo-030m 72 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 111 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 91 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 136 bp overlap
ChIP THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h GSE103477.CTCF.THP-1_siNIPBL-NS1-Pam3csk-7h-Flavo-3h 91 bp overlap
ChIP VCaP ENCFF858YQT 136 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 135 bp overlap
ChIP brain ENCFF163BBN 72 bp overlap
ChIP brain ENCFF685VRG 114 bp overlap
ChIP chondrocyte ENCFF134ORZ 136 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 80 bp overlap
ChIP delta-47 GSE70764.CTCF.delta-47 136 bp overlap
ChIP endothelial_brain-microvascular ENCSR000DTA.CTCF.endothelial_brain-microvascular 105 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 136 bp overlap
ChIP epithelial_kidney ENCSR000DVH.CTCF.epithelial_kidney 136 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 53 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 136 bp overlap
ChIP hESC_D2 GSE116862.CTCF.hESC_D2 53 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 136 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 136 bp overlap
ChIP keratinocyte ENCSR000ALJ.CTCF.keratinocyte 136 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 94 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 136 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 136 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 124 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 65 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 122 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 106 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 51 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 72 bp overlap
ChIP spleen ENCSR595BPR.CTCF.spleen 77 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 60 bp overlap
E2F1 1 dataset
ChIP HepG2 ENCFF919WXY 136 bp overlap
ESR1 1 dataset
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 136 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 72 bp overlap
FOXO3 1 dataset
ChIP Hep-G2 GSE97661.FOXO3.Hep-G2 136 bp overlap
GATA4 2 datasets
ChIP Hep-G2 ENCSR590CNM.GATA4.Hep-G2 126 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 136 bp overlap
GATAD2B 1 dataset
ChIP HepG2 ENCFF829IBY 80 bp overlap
GFI1 1 dataset
ChIP Hep-G2 ENCSR849FVL.GFI1.Hep-G2 136 bp overlap
GMEB1 1 dataset
ChIP Hep-G2 ENCSR780OXL.GMEB1.Hep-G2 136 bp overlap
HOXA5 2 datasets
ChIP HepG2 ENCFF580MCT 136 bp overlap
ChIP HepG2 ENCFF580MCT 136 bp overlap
INO80 3 datasets
ChIP Hep-G2 GSE97411.INO80.Hep-G2 136 bp overlap
ChIP Hep-G2 GSE107730.INO80.Hep-G2 136 bp overlap
ChIP Huh-7 GSE97411.INO80.Huh-7 136 bp overlap
KDM1A 1 dataset
ChIP HepG2 ENCFF240UWG 136 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 109 bp overlap
KLF12 2 datasets
ChIP HepG2 ENCFF395LSO 120 bp overlap
ChIP HepG2 ENCFF395LSO 136 bp overlap
KLF6 1 dataset
ChIP Hep-G2 ENCSR757EKM.KLF6.Hep-G2 136 bp overlap
KMT2A 1 dataset
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 136 bp overlap
MCRS1 1 dataset
ChIP Huh-7 GSE97411.MCRS1.Huh-7 134 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 136 bp overlap
MYBL2 2 datasets
ChIP Hep-G2 ENCSR581KCO.MYBL2.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF176QIX 136 bp overlap
NFYB 1 dataset
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 83 bp overlap
NR2F2 1 dataset
ChIP Hep-G2 ENCSR000BVM.NR2F2.Hep-G2 106 bp overlap
NR3C1 1 dataset
ChIP K-562_GLUCC ERP007081.NR3C1.K-562_GLUCC 73 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 136 bp overlap
POLR2A 3 datasets
ChIP HepG2 ENCFF252NAR 136 bp overlap
ChIP HepG2 ENCFF252NAR 136 bp overlap
ChIP HepG2 ENCFF736SLT 136 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 136 bp overlap
ChIP HepG2 ENCFF508UTS 136 bp overlap
PRDM15 1 dataset
ChIP HepG2 ENCFF259LUZ 136 bp overlap
RAD21 2 datasets
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 70 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 136 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF554DMZ 136 bp overlap
RBM22 1 dataset
ChIP HepG2 ENCFF561IAJ 136 bp overlap
RBPJ 1 dataset
ChIP HepG2 ENCFF367CFI 136 bp overlap
SFPQ 1 dataset
ChIP HepG2 ENCFF145CDF 84 bp overlap
SIX1 1 dataset
ChIP Hep-G2 ENCSR561BQM.SIX1.Hep-G2 107 bp overlap
SMAD2-3 1 dataset
ChIP HGrC1_EV GSE138496.SMAD2-3.HGrC1_EV 105 bp overlap
SMARCA4 1 dataset
ChIP HS-SY-2_HA-tagged GSE108926.SMARCA4.HS-SY-2_HA-tagged 136 bp overlap
SMARCB1 1 dataset
ChIP Hep-G2 GSE69566.SMARCB1.Hep-G2 136 bp overlap
SMC1 1 dataset
ChIP HAP1_WaplKO-33 GSE94992.SMC1.HAP1_WaplKO-33 136 bp overlap
SMC3 4 datasets
ChIP GP5D GSE51234.SMC3.GP5D 100 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 136 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 136 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 136 bp overlap
SSRP1 2 datasets
ChIP Hep-G2 ENCSR571PDN.SSRP1.Hep-G2 136 bp overlap
ChIP HepG2 ENCFF540BLL 136 bp overlap
STAT6 1 dataset
ChIP HepG2 ENCFF370LZV 57 bp overlap
TBP 1 dataset
ChIP HepG2 ENCFF023IVD 126 bp overlap
TEAD4 1 dataset
ChIP HepG2 ENCFF006QNB 136 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 136 bp overlap
ZBTB2 1 dataset
ChIP HepG2 ENCFF605PMZ 76 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 136 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 114 bp overlap
ZGPAT 1 dataset
ChIP HepG2 ENCFF055YSO 110 bp overlap
ZNF124 1 dataset
ChIP HepG2 ENCFF764EFJ 114 bp overlap
ZNF44 1 dataset
ChIP Hep-G2 ENCSR914HPP.ZNF44.Hep-G2 136 bp overlap
ZNF441 1 dataset
ChIP HepG2 ENCFF738UDK 136 bp overlap
ZNF48 1 dataset
ChIP HepG2 ENCFF362CDQ 136 bp overlap
ZNF761 1 dataset
ChIP HepG2 ENCFF761IOF 78 bp overlap
ZNF790 1 dataset
ChIP HepG2 ENCFF743NFR 136 bp overlap