chr4 : 55,256,726 55,257,189
463 bp 74 TFs 4 linked genes
This 463 bp open chromatin element is linked to 4 target genes and is bound by 74 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
SRD5A3 89.2 kb Distal Multiome
KDR 131.4 kb Distal Multiome
TMEM165 138.9 kb Distal Multiome
CLOCK 289.9 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:55,251,726 – 55,262,189
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 157 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 239 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 431 bp overlap
CTCF 2 datasets
ChIP K-562_RF2-insertion GSE140868.CTCF.K-562_RF2-insertion 113 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 184 bp overlap
E2F6 1 dataset
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 374 bp overlap
ERG 1 dataset
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 196 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 463 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 455 bp overlap
ETV1 1 dataset
ChIP GIST-T1 GSE106624.ETV1.GIST-T1 154 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 305 bp overlap
ChIP DE DE-FOXA2-2 319 bp overlap
GATA2 7 datasets
ChIP ESF GSE108408.GATA2.ESF 280 bp overlap
ChIP SK-N-SH ENCFF764OZD 325 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 228 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 451 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 352 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 306 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P1 191 bp overlap
GATA3 2 datasets
ChIP Kelly GSE65664.GATA3.Kelly 298 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 247 bp overlap
GATA4 14 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 463 bp overlap
ChIP DE DE-GATA4-2 463 bp overlap
ChIP G296S GSE85628.GATA4.G296S 463 bp overlap
ChIP G296S_2 GSE85628.GATA4.G296S_2 463 bp overlap
ChIP G296S_4 GSE85628.GATA4.G296S_4 427 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 452 bp overlap
ChIP cardiomyocyte GSE85628.GATA4.cardiomyocyte 410 bp overlap
ChIP cardiomyocyte_1 GSE85628.GATA4.cardiomyocyte_1 409 bp overlap
ChIP cardiomyocyte_5 GSE85628.GATA4.cardiomyocyte_5 423 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 372 bp overlap
ChIP foregut GSE117136.GATA4.foregut 335 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 284 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 397 bp overlap
GATA6 15 datasets
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 443 bp overlap
ChIP DE DE-GATA6-2 463 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 426 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 433 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 295 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 463 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 463 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 450 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 394 bp overlap
ChIP foregut GSE117136.GATA6.foregut 344 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 463 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 334 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 463 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 364 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 246 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 255 bp overlap
HEY2 1 dataset
ChIP hiPSC GSE81585.HEY2.hiPSC 345 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 341 bp overlap
KDM1A 1 dataset
ChIP SET-2 GSE121424.KDM1A.SET-2 241 bp overlap
LHX6 1 dataset
Motif DE_36h DE_36h-LHX6_MA0658.2 8 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 152 bp overlap
MEF2C 1 dataset
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEIS1 1 dataset
ChIP CHRF28811 ERR063469.MEIS1.CHRF28811 409 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 391 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 399 bp overlap
MYCN 1 dataset
ChIP Kelly GSE94822.MYCN.Kelly 368 bp overlap
NFIA 1 dataset
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIC 1 dataset
Motif DE_36h DE_36h-NFIC_MA0161.3 7 bp overlap
NFIX 1 dataset
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
NKX2-3 1 dataset
Motif DE_60h DE_60h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_60h DE_60h-NKX2-4_MA2003.2 8 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 463 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 412 bp overlap
NKX2-8 1 dataset
Motif DE_60h DE_60h-NKX2-8_MA0673.2 8 bp overlap
NR2F2 1 dataset
ChIP hiPSC GSE81585.NR2F2.hiPSC 285 bp overlap
Nkx3-1 1 dataset
Motif DE_60h DE_60h-Nkx3-1_MA0124.3 7 bp overlap
Nkx3-2 1 dataset
Motif DE_60h DE_60h-Nkx3-2_MA0122.4 10 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 235 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 179 bp overlap
PGR 2 datasets
ChIP leiomyoma_RU486 GSE40724.PGR.leiomyoma_RU486 151 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 437 bp overlap
POU1F1 1 dataset
Motif DE_36h DE_36h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_36h DE_36h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_36h DE_36h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_36h DE_36h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_36h DE_36h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_36h DE_36h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_36h DE_36h-POU3F4_MA0789.1 9 bp overlap
RAD21 2 datasets
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 149 bp overlap
ChIP liver ENCFF522JHE 375 bp overlap
RBPJ 1 dataset
ChIP NHEK GSE29498.RBPJ.NHEK 155 bp overlap
RELA 1 dataset
Motif DE_60h DE_60h-RELA_MA0107.1 10 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 169 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 169 bp overlap
Rfx6 1 dataset
Motif DE_36h DE_36h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 454 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 269 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 350 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 255 bp overlap
SMARCA4 3 datasets
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 307 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 311 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCA4.TTC-549_NoDox 277 bp overlap
SMARCC1 2 datasets
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 463 bp overlap
ChIP TTC-549_NoDox GSE71504.SMARCC1.TTC-549_NoDox 459 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 239 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 299 bp overlap
SREBF1 1 dataset
Motif DE_36h DE_36h-SREBF1_MA0829.3 10 bp overlap
SREBF2 1 dataset
Motif DE_60h DE_60h-SREBF2_MA0596.1 10 bp overlap
STAT1 2 datasets
ChIP SET-2_DMSO GSE100566.STAT1.SET-2_DMSO 285 bp overlap
ChIP SET-2_cortistatin-A GSE100566.STAT1.SET-2_cortistatin-A 295 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 245 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 185 bp overlap
TAL1 1 dataset
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 345 bp overlap
TBX5 4 datasets
ChIP G296S GSE85628.TBX5.G296S 318 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 318 bp overlap
ChIP G296S_4 GSE85628.TBX5.G296S_4 234 bp overlap
ChIP hiPSC GSE81585.TBX5.hiPSC 374 bp overlap
TCF7L2 1 dataset
ChIP CD34_PROG_BIO GSE29194.TCF7L2.CD34_PROG_BIO 207 bp overlap
YAP1 1 dataset
ChIP hiPSC GSE111930.YAP1.hiPSC 117 bp overlap
ZNF135 1 dataset
Motif DE_36h DE_36h-ZNF135_MA1587.1 14 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 155 bp overlap
ZNF528 1 dataset
Motif DE_60h DE_60h-ZNF528_MA1597.1 17 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF684 1 dataset
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap