chr4 : 41,619,123 41,619,519
396 bp 75 TFs 1 linked gene
This 396 bp open chromatin element is linked to LIMCH1 and is bound by 75 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LIMCH1 6.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:41,614,123 – 41,624,519
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
75 transcription factors
Source
Cell type
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 194 bp overlap
ATF3 1 dataset
ChIP H1 ENCFF852GZY 241 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 313 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 302 bp overlap
CHD2 1 dataset
ChIP H1 ENCFF991MKH 258 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 218 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 260 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 146 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 169 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 305 bp overlap
CTCF 25 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF772DML 182 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 197 bp overlap
ChIP H9 ENCFF152GTF 232 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 181 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 147 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 188 bp overlap
ChIP endodermal cell ENCFF471YCZ 226 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 204 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 111 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 282 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 173 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 163 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 142 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 156 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 184 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 210 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 191 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 206 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 280 bp overlap
ChIP neural progenitor cell ENCFF420RBO 331 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 223 bp overlap
ChIP type B pancreatic cell ENCFF910FNQ 333 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 312 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF093OYK 330 bp overlap
DUX4 1 dataset
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EHF 1 dataset
Motif DE_12h DE_12h-EHF_MA0598.4 9 bp overlap
ELF1 1 dataset
Motif DE_12h DE_12h-ELF1_MA0473.4 9 bp overlap
ELF3 1 dataset
Motif DE_12h DE_12h-ELF3_MA0640.3 9 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000AUQ.EP300.WA01 235 bp overlap
ESR1 3 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 219 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 217 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 234 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
EZH2 2 datasets
ChIP THP-1 GSE135024.EZH2.THP-1 396 bp overlap
ChIP dermal-fibroblast_Transformed GSE126396.EZH2.dermal-fibroblast_Transformed 186 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 160 bp overlap
GLYR1 1 dataset
ChIP HeLa GSE20303.GLYR1.HeLa 307 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 236 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 248 bp overlap
KLF10 1 dataset
Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap
KLF14 1 dataset
Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 378 bp overlap
MECOM 1 dataset
ChIP SKH1_CEBPA-ER_E2 GSE102697.MECOM.SKH1_CEBPA-ER_E2 151 bp overlap
NANOG 1 dataset
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 188 bp overlap
Nanog 1 dataset
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
OGT 1 dataset
ChIP PC-3_OSMI-2 GSE112667.OGT.PC-3_OSMI-2 358 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF446ZGT 249 bp overlap
POU5F1 2 datasets
ChIP BG03 GSE21614.POU5F1.BG03 153 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 310 bp overlap
PRDM1 1 dataset
Motif DE_12h DE_12h-PRDM1_MA0508.4 7 bp overlap
Prdm5 2 datasets
Motif DE_12h DE_12h-Prdm5_MA1999.2 11 bp overlap
Motif ES_0h ES_0h-Prdm5_MA1999.2 11 bp overlap
RAD21 9 datasets
ChIP H1 ENCFF698EWO 209 bp overlap
ChIP H1 ENCFF967OJF 200 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 200 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 246 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 212 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 203 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 149 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 230 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 191 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 331 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RELA 1 dataset
ChIP LNCaP_SIFOXA1_TNFA GSE83860.RELA.LNCaP_SIFOXA1_TNFA 90 bp overlap
RUNX2 2 datasets
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
Motif ES_0h ES_0h-RUNX2_MA0511.2 9 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 155 bp overlap
SMARCA4 1 dataset
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 177 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 311 bp overlap
SOX12 1 dataset
Motif DE_12h DE_12h-SOX12_MA1561.2 10 bp overlap
SP1 2 datasets
Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 162 bp overlap
SP4 1 dataset
Motif DE_12h DE_12h-SP4_MA0685.2 9 bp overlap
SP5 2 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SS18 1 dataset
ChIP Aska-SS GSE108025.SS18.Aska-SS 272 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 185 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 137 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 200 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 208 bp overlap
TOP2A 1 dataset
ChIP KG-1_etoposide_VP16 GSE114048.TOP2A.KG-1_etoposide_VP16 92 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 311 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 265 bp overlap
Tfcp2l1 1 dataset
Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 259 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 289 bp overlap
ZIM3 1 dataset
Motif DE_12h DE_12h-ZIM3_MA1709.2 11 bp overlap
ZNF135 1 dataset
Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap
ZNF184 2 datasets
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF460 1 dataset
Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap
ZNF530 1 dataset
Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap