chr4 : 24,661,948 – 24,662,562

614 bp 55 TFs 3 linked genes

This 614 bp open chromatin element is linked to DHX15, ENSG00000289201, and CCDC149 and is bound by 55 transcription factors.

Linked Genes

3 genes

Gene	Dist. to TSS	Distance	Link type
DHX15	77.8 kb	Distal	Multiome+HiCAR
ENSG00000289201	189.3 kb	Distal	Multiome
CCDC149	250.7 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

55 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 425 bp overlap

ASH2L 2 datasets

ChIP WA01 ENCSR850KIP.ASH2L.WA01 242 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 192 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 245 bp overlap

ATF4 1 dataset

Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap

BCOR 1 dataset

ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 388 bp overlap

BRD3 1 dataset

ChIP H-1 GSE126661.BRD3.H-1 169 bp overlap

CEBPB 1 dataset

ChIP WA01 ENCSR000EBV.CEBPB.WA01 121 bp overlap

CHD7 1 dataset

ChIP WA01 ENCSR000AVA.CHD7.WA01 148 bp overlap

CREB1 3 datasets

Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 219 bp overlap

ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 194 bp overlap

CTBP2 1 dataset

ChIP WA01 ENCSR000EUO.CTBP2.WA01 137 bp overlap

CTCF 1 dataset

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 382 bp overlap

EGR1 2 datasets

ChIP H1 ENCFF451BLH 176 bp overlap

ChIP WA01 ENCSR000BJA.EGR1.WA01 130 bp overlap

EP300 1 dataset

ChIP WA01 ENCSR000BKK.EP300.WA01 169 bp overlap

ETS1 1 dataset

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 529 bp overlap

EZH2 1 dataset

ChIP SF8628 GSE94834.EZH2.SF8628 112 bp overlap

FOXK1 2 datasets

ChIP WTC11 ENCFF875IGU 391 bp overlap

ChIP WTC11 ENCFF875IGU 347 bp overlap

Gfi1B 1 dataset

Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap

HDAC2 2 datasets

ChIP H1 ENCFF939VKA 237 bp overlap

ChIP WA01 ENCSR000BNR.HDAC2.WA01 224 bp overlap

JUN 1 dataset

ChIP ESC S34-ESC-d0-JUN-exp2 273 bp overlap

MEF2C 1 dataset

Motif ES_0h ES_0h-MEF2C_MA0497.2 11 bp overlap

NANOG 7 datasets

ChIP GM23338 ENCFF065NZG 311 bp overlap

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 224 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 546 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 208 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 256 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 430 bp overlap

ChIP hESC GSE18292.NANOG.hESC 93 bp overlap

NIPBL 1 dataset

ChIP hESC GSE64758.NIPBL.hESC 185 bp overlap

POLR2A 1 dataset

ChIP GM23338 ENCFF450WCS 372 bp overlap

POU2F1::SOX2 1 dataset

Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 377 bp overlap

POU5F1 13 datasets

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP GM23338 ENCFF333SNB 311 bp overlap

ChIP H1 ENCFF698ZAP 205 bp overlap

ChIP HUES-8 GSE109524.POU5F1.HUES-8 581 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 614 bp overlap

ChIP WA01 ENCSR000BMU.POU5F1.WA01 193 bp overlap

ChIP WA09 GSE105028.POU5F1.WA09 324 bp overlap

ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 208 bp overlap

ChIP hESC ENCSR264RJX.POU5F1.hESC 415 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 528 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 460 bp overlap

ChIP hiPSC GSE56567.POU5F1.hiPSC 268 bp overlap

ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 265 bp overlap

PRDM14 1 dataset

ChIP hESC GSE22767.PRDM14.hESC 420 bp overlap

PRDM15 1 dataset

ChIP WTC11 ENCFF108TMF 401 bp overlap

Pou5f1::Sox2 1 dataset

Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap

RAD21 6 datasets

ChIP H1 ENCFF967OJF 245 bp overlap

ChIP HAP1 GSE152721.RAD21.HAP1 459 bp overlap

ChIP HAP1 GSE126634.RAD21.HAP1 435 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 493 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 419 bp overlap

ChIP WA09 GSE105028.RAD21.WA09 353 bp overlap

RBBP5 1 dataset

ChIP WA01 ENCSR000AQC.RBBP5.WA01 253 bp overlap

REST 1 dataset

ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 161 bp overlap

RYBP 1 dataset

ChIP WA01 GSE104690.RYBP.WA01 330 bp overlap

SIN3A 2 datasets

ChIP H1 ENCFF042ZSL 514 bp overlap

ChIP WA01 ENCSR000EBO.SIN3A.WA01 134 bp overlap

SIX2 4 datasets

ChIP HEK GSE73865.SIX2.HEK 290 bp overlap

ChIP HEK GSE73865.SIX2.HEK 52 bp overlap

ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 180 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 258 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 476 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 394 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 417 bp overlap

SOX2 1 dataset

ChIP hiPSC GSE56567.SOX2.hiPSC 375 bp overlap

SP1 2 datasets

ChIP WA01 ENCSR000BIR.SP1.WA01 257 bp overlap

ChIP WTC11 ENCFF688PEU 319 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 217 bp overlap

TEAD1 1 dataset

ChIP WTC11 ENCFF502QUV 350 bp overlap

TEAD4 1 dataset

ChIP BJ_fibroblast_CD13-neg GSE114367.TEAD4.BJ_fibroblast_CD13-neg 396 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 234 bp overlap

TP63 1 dataset

ChIP foreskin GSE126390.TP63.foreskin 133 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 302 bp overlap

ZBTB26 1 dataset

Motif ES_0h ES_0h-ZBTB26_MA1579.2 8 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 135 bp overlap

ZNF207 1 dataset

ChIP WA09 GSE118632.ZNF207.WA09 289 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 271 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 162 bp overlap

ZNF549 1 dataset

Motif ES_0h ES_0h-ZNF549_MA1728.2 8 bp overlap

Zfp335 1 dataset

Motif ES_0h ES_0h-Zfp335_MA2002.2 7 bp overlap

Zic1::Zic2 1 dataset

Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap