chr1 : 70,714,256 70,714,461
205 bp 77 TFs 1 linked gene
This 205 bp open chromatin element is linked to LINC01788 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
LINC01788 7.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:70,709,256 – 70,719,461
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
AR 1 dataset
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 73 bp overlap
CTCF 78 datasets
ChIP A-673 ENCSR611JJS.CTCF.A-673 155 bp overlap
ChIP AG10803 ENCFF549AQK 193 bp overlap
ChIP C4-2B ENCFF821XVN 205 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 118 bp overlap
ChIP GM23338 ENCFF531QOI 107 bp overlap
ChIP GM23338 ENCFF772DML 138 bp overlap
ChIP H1 ENCFF414GZI 172 bp overlap
ChIP H1 ENCFF764RHO 79 bp overlap
ChIP H9 ENCFF152GTF 153 bp overlap
ChIP HEC-1-B_RF-insertion GSE140868.CTCF.HEC-1-B_RF-insertion 78 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 164 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 149 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 205 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 152 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 154 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 145 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 130 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 205 bp overlap
ChIP K-562_RabbitC GSE137216.CTCF.K-562_RabbitC 205 bp overlap
ChIP K-562_WT GSE140868.CTCF.K-562_WT 158 bp overlap
ChIP K562 ENCFF082GOI 139 bp overlap
ChIP K562 ENCFF400DFR 182 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 162 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 123 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 155 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 155 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 205 bp overlap
ChIP LNCaP_Ctrl GSE125639.CTCF.LNCaP_Ctrl 128 bp overlap
ChIP MCF-7 ENCFF162GNE 173 bp overlap
ChIP MCF-7 ENCFF198DQX 175 bp overlap
ChIP MCF-7 ENCFF210JUZ 205 bp overlap
ChIP MCF-7 ENCFF494VXA 175 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 205 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 165 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 201 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 138 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 146 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 118 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 157 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 152 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 167 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 172 bp overlap
ChIP MDA-MB-435_Asynchronous GSE102019.CTCF.MDA-MB-435_Asynchronous 187 bp overlap
ChIP NB69 GSE101295.CTCF.NB69 205 bp overlap
ChIP SK-N-AS GSE101295.CTCF.SK-N-AS 170 bp overlap
ChIP SK-N-SH ENCFF575DMG 143 bp overlap
ChIP SK-N-SH ENCFF731NJX 202 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 205 bp overlap
ChIP SK-N-SH ENCSR000EIC.CTCF.SK-N-SH 165 bp overlap
ChIP SK-N-SH ENCSR000BLX.CTCF.SK-N-SH 76 bp overlap
ChIP T-47D GSE111923.CTCF.T-47D 198 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 114 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 130 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-000m-Flavo-000m 168 bp overlap
ChIP THP-1_macrophage_PMA GSE96800.CTCF.THP-1_macrophage_PMA 196 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 205 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 152 bp overlap
ChIP ZR751 ERP000783.CTCF.ZR751 141 bp overlap
ChIP ascending-aorta ENCSR846JKO.CTCF.ascending-aorta 205 bp overlap
ChIP endodermal cell ENCFF471YCZ 165 bp overlap
ChIP fibroblast of dermis ENCFF986DNJ 192 bp overlap
ChIP fibroblast_DERMAL ENCSR000APM.CTCF.fibroblast_DERMAL 188 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 151 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 185 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 164 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 201 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 205 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 181 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 163 bp overlap
ChIP islet ERP004003.CTCF.islet 146 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ANE.CTCF.myoblast_skeletal_muscle 161 bp overlap
ChIP myotube ENCFF981UHL 205 bp overlap
ChIP myotube ENCSR000ANS.CTCF.myotube 205 bp overlap
ChIP neural progenitor cell ENCFF420RBO 205 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 139 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 165 bp overlap
ChIP skeletal muscle myoblast ENCFF813BQI 205 bp overlap
DPRX 1 dataset
Motif DE_12h DE_12h-DPRX_MA1480.2 9 bp overlap
DUX4 2 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 170 bp overlap
ESR1 14 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 178 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 164 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 203 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 169 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 192 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 186 bp overlap
ChIP MCF-7_ER_t60 GSE119057.ESR1.MCF-7_ER_t60 181 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 186 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 175 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 181 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 106 bp overlap
ChIP T-47D_CR3flp GSE99479.ESR1.T-47D_CR3flp 176 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 205 bp overlap
ChIP T-47D_flp-ctrl GSE99479.ESR1.T-47D_flp-ctrl 164 bp overlap
FOXA1 9 datasets
ChIP MCF-7 GSE59530.FOXA1.MCF-7 150 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 77 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 190 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 205 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 205 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 203 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 139 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 109 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 205 bp overlap
FOXA2 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 205 bp overlap
FOXB1 1 dataset
Motif DE_12h DE_12h-FOXB1_MA0845.1 11 bp overlap
FOXC1 1 dataset
Motif DE_12h DE_12h-FOXC1_MA0032.2 11 bp overlap
FOXC2 1 dataset
Motif DE_12h DE_12h-FOXC2_MA0846.2 11 bp overlap
FOXO6 1 dataset
Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap
FOXP2 2 datasets
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap
GATA3 1 dataset
ChIP T-47D ENCSR000BMX.GATA3.T-47D 152 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 89 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 119 bp overlap
HSF1 1 dataset
Motif DE_12h DE_12h-HSF1_MA0486.2 13 bp overlap
Hmga1 1 dataset
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
IKZF1 2 datasets
Motif DE_12h DE_12h-IKZF1_MA1508.2 8 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 205 bp overlap
IRF3 1 dataset
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
MEF2A 1 dataset
Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap
MEF2B 1 dataset
Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap
MEF2C 1 dataset
Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap
MEF2D 1 dataset
Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
NFYA 1 dataset
Motif DE_12h DE_12h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_12h DE_12h-NFYC_MA1644.2 7 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap
NR3C1 1 dataset
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 166 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2e1 1 dataset
Motif DE_12h DE_12h-Nr2e1_MA0676.1 9 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 203 bp overlap
PBX1 1 dataset
Motif DE_12h DE_12h-PBX1_MA0070.2 9 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 173 bp overlap
RAD21 28 datasets
ChIP A-549 ENCSR000BUC.RAD21.A-549 119 bp overlap
ChIP H1 ENCFF698EWO 138 bp overlap
ChIP H1 ENCFF967OJF 82 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 125 bp overlap
ChIP IMR-5 GSE78957.RAD21.IMR-5 114 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 137 bp overlap
ChIP K-562_RF2-insertion GSE140868.RAD21.K-562_RF2-insertion 152 bp overlap
ChIP K562 ENCFF169SQI 133 bp overlap
ChIP K562 ENCFF634XYR 100 bp overlap
ChIP MCF-7 ENCFF694KOM 205 bp overlap
ChIP MCF-7 ENCFF724VCQ 205 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 205 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 196 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 179 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 201 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 173 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 140 bp overlap
ChIP SK-N-SH ENCFF747MAS 194 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 185 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 178 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 169 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 164 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 158 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 196 bp overlap
ChIP hiPSC_IID12 GSE106870.RAD21.hiPSC_IID12 106 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 94 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 201 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 183 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP K-562 ENCSR137ZMQ.REST.K-562 205 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 2 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 126 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 51 bp overlap
SMC1A 1 dataset
ChIP MCF-7 GSE76893.SMC1A.MCF-7 145 bp overlap
SMC3 7 datasets
ChIP GP5D GSE51234.SMC3.GP5D 205 bp overlap
ChIP HeLa GSE126990.SMC3.HeLa 167 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 167 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 167 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 145 bp overlap
ChIP SK-N-SH ENCFF791WFB 205 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 147 bp overlap
SOX2 1 dataset
ChIP RENVM GSE49404.SOX2.RENVM 165 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 205 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 205 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 195 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 172 bp overlap
STAT3 1 dataset
Motif DE_12h DE_12h-STAT3_MA0144.3 9 bp overlap
Stat2 2 datasets
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
Motif DE_12h DE_12h-Stat2_MA1623.2 10 bp overlap
TEAD1 1 dataset
Motif DE_12h DE_12h-TEAD1_MA0090.4 9 bp overlap
TEAD2 1 dataset
Motif DE_12h DE_12h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_12h DE_12h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_12h DE_12h-TEAD4_MA0809.3 8 bp overlap
THRA 1 dataset
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
ZNF143 2 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 202 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN16 1 dataset
Motif DE_12h DE_12h-ZSCAN16_MA2100.1 18 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap