chr3 : 188,049,203 188,050,110
907 bp 67 TFs 2 linked genes
This 907 bp open chromatin element is linked to LPP and TPRG1 and is bound by 67 transcription factors.
Linked Genes
2 genes
Link type
Gene Expression Dist. to TSS Distance Link type
LPP 103.6 kb Distal Multiome
TPRG1 897.5 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:188,044,203 – 188,055,110
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
BAP1 1 dataset
ChIP UM-RC-6_empty-vector GSE101987.BAP1.UM-RC-6_empty-vector 350 bp overlap
BCL11B 3 datasets
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 119 bp overlap
ChIP thymus_CD34neg GSE84677.BCL11B.thymus_CD34neg 229 bp overlap
ChIP thymus_CD34pos GSE84677.BCL11B.thymus_CD34pos 181 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 198 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 225 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 69 bp overlap
BRD4 2 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 480 bp overlap
ChIP KOPT-K1_E GSE54379.BRD4.KOPT-K1_E 195 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 168 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CHD8 1 dataset
ChIP T-47D_ETOH_45 GSE62428.CHD8.T-47D_ETOH_45 113 bp overlap
CREBBP 2 datasets
ChIP tonsil_GCBC_p5 GSE89688.CREBBP.tonsil_GCBC_p5 393 bp overlap
ChIP tonsil_GCBc_p4 GSE89688.CREBBP.tonsil_GCBc_p4 274 bp overlap
CTCF 4 datasets
ChIP DND-41 ENCFF913MRA 211 bp overlap
ChIP DND41 ENCSR000AQU.CTCF.DND41 130 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 66 bp overlap
ChIP uterus ENCFF631BWF 131 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 325 bp overlap
ChIP BLaER1 ENCFF335XTP 251 bp overlap
ChIP BLaER1 ENCFF460KDD 331 bp overlap
ELF1 1 dataset
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 145 bp overlap
EP300 2 datasets
ChIP 697 GSE138031.EP300.697 111 bp overlap
ChIP AML GSE131939.EP300.AML 168 bp overlap
ERG 7 datasets
ChIP Jurkat GSE49091.ERG.Jurkat 150 bp overlap
ChIP Jurkat GSE49091.ERG.Jurkat 129 bp overlap
ChIP ME-1 GSE46044.ERG.ME-1 224 bp overlap
ChIP SEM GSE117864.ERG.SEM 218 bp overlap
ChIP SKNO-1 GSE23730.ERG.SKNO-1 235 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 200 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 159 bp overlap
ESR1 3 datasets
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 175 bp overlap
ChIP MCF-7_aldosterone GSE99626.ESR1.MCF-7_aldosterone 229 bp overlap
ChIP T-47D_PROG GSE68355.ESR1.T-47D_PROG 248 bp overlap
ETS1 2 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.ETS1.CTV-1_DSG_SPI1-mut 154 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 116 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 144 bp overlap
FLI1 3 datasets
ChIP CTV-1_DSG_SPI1-mut GSE128835.FLI1.CTV-1_DSG_SPI1-mut 116 bp overlap
ChIP SEM GSE117864.FLI1.SEM 156 bp overlap
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 239 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 473 bp overlap
ChIP DE DE-FOXA2-2 472 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 190 bp overlap
GATA2 2 datasets
ChIP CD34_ACY957 GSE60792.GATA2.CD34_ACY957 88 bp overlap
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 150 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 447 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 435 bp overlap
ChIP DE DE-GATA4-2 738 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 348 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 415 bp overlap
ChIP DE DE-GATA6-2 602 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 370 bp overlap
HDAC2 1 dataset
ChIP pre-B-cell GSE107886.HDAC2.pre-B-cell 80 bp overlap
IKZF1 2 datasets
ChIP BCR-ABL1_LAX2 GSE58825.IKZF1.BCR-ABL1_LAX2 167 bp overlap
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 239 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 222 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 87 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 130 bp overlap
KDM1A 1 dataset
ChIP OCI-Ly1_si GSE107920.KDM1A.OCI-Ly1_si 95 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 236 bp overlap
LDB1 3 datasets
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 210 bp overlap
ChIP Kasumi-1_ctrl GSE121280.LDB1.Kasumi-1_ctrl 107 bp overlap
ChIP Kasumi-1_siRE GSE121280.LDB1.Kasumi-1_siRE 110 bp overlap
LMO1 1 dataset
ChIP Jurkat GSE94391.LMO1.Jurkat 120 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 117 bp overlap
MTA2 1 dataset
ChIP pre-B-cell GSE107886.MTA2.pre-B-cell 298 bp overlap
MYB 5 datasets
ChIP CD4_Th1 GSE72266.MYB.CD4_Th1 122 bp overlap
ChIP Jurkat GSE59657.MYB.Jurkat 191 bp overlap
ChIP Loucy GSE94000.MYB.Loucy 165 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 121 bp overlap
ChIP SEM GSE117864.MYB.SEM 119 bp overlap
MYC 3 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP Jurkat GSE83777.MYC.Jurkat 181 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 134 bp overlap
NFIA 1 dataset
ChIP HepG2 ENCFF815HWK 391 bp overlap
NFIB 3 datasets
ChIP MCF-7 ENCFF799WGQ 417 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 323 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 361 bp overlap
NFIC 3 datasets
ChIP Hep-G2 GSE108514.NFIC.Hep-G2 346 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 125 bp overlap
ChIP K-562 ENCSR796ITY.NFIC.K-562 372 bp overlap
NR3C1 1 dataset
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 132 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE126300.PAX5.NALM-6 200 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 295 bp overlap
PGR 6 datasets
ChIP T-47D GSE31129.PGR.T-47D 263 bp overlap
ChIP T-47D-A_R5020 GSE80358.PGR.T-47D-A_R5020 254 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 440 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 436 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 286 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 325 bp overlap
POLR2A 1 dataset
ChIP spleen ENCFF446ZGT 297 bp overlap
RAD21 3 datasets
ChIP RH4 GSE83726.RAD21.RH4 130 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 458 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.RAD21.peripheral-blood-neutrophil_US-1 233 bp overlap
RELB 1 dataset
ChIP L1236 GSE63736.RELB.L1236 121 bp overlap
RUNX1 7 datasets
ChIP 697 GSE138031.RUNX1.697 197 bp overlap
ChIP Jurkat GSE76181.RUNX1.Jurkat 189 bp overlap
ChIP Jurkat GSE68976.RUNX1.Jurkat 189 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 172 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 135 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 136 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 90 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE115115.RUNX1T1.Kasumi-1 157 bp overlap
RUNX2 1 dataset
ChIP PER-117 GSE151819.RUNX2.PER-117 211 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 183 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 796 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 334 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 301 bp overlap
SMARCA4 4 datasets
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 121 bp overlap
ChIP CTV-1_FLAG_SPI1-mut GSE128835.SMARCA4.CTV-1_FLAG_SPI1-mut 161 bp overlap
ChIP CTV-1_delA GSE128835.SMARCA4.CTV-1_delA 103 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 214 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 453 bp overlap
SMC3 1 dataset
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 460 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 165 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 379 bp overlap
SPI1 8 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 82 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 226 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 165 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 251 bp overlap
ChIP Kasumi-1_SICTR GSE60130.SPI1.Kasumi-1_SICTR 242 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 127 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 100 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 150 bp overlap
STAT5B 1 dataset
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 149 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 177 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 107 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 101 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 255 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 268 bp overlap
ZNF766 1 dataset
ChIP HEK293T GSE78099.ZNF766.HEK293T 162 bp overlap