chr3 : 158,961,308 – 158,962,262

954 bp 70 TFs 1 linked gene

This 954 bp open chromatin element is linked to IQCJ-SCHIP1 and is bound by 70 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
IQCJ-SCHIP1		at TSS	At TSS	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

70 transcription factors

ARID1A 1 dataset

ChIP HAP1 GSE108387.ARID1A.HAP1 481 bp overlap

ASCL1 1 dataset

ChIP NCI-H82 GSE69394.ASCL1.NCI-H82 166 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 469 bp overlap

Atoh1 1 dataset

Motif DE_12h DE_12h-Atoh1_MA1467.3 7 bp overlap

BRD3 1 dataset

ChIP HUVEC-C GSE60171.BRD3.HUVEC-C 219 bp overlap

BRD4 3 datasets

ChIP HAP1 GSE108387.BRD4.HAP1 608 bp overlap

ChIP HUVEC-C GSE60171.BRD4.HUVEC-C 214 bp overlap

ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 162 bp overlap

CTCF 3 datasets

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 420 bp overlap

ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 174 bp overlap

ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 436 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 354 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 334 bp overlap

EBF1 1 dataset

ChIP MUTUL GSE75503.EBF1.MUTUL 333 bp overlap

EP300 1 dataset

ChIP hESC GSE17917.EP300.hESC 295 bp overlap

FOXP1 1 dataset

ChIP H9 GSE31006.FOXP1.H9 138 bp overlap

FOXP2 1 dataset

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

GABPA 1 dataset

ChIP VCaP GSE49091.GABPA.VCaP 160 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 406 bp overlap

HAND2 1 dataset

Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

KDM1A 1 dataset

ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 688 bp overlap

KDM4A 1 dataset

ChIP WA01 ENCSR000AVC.KDM4A.WA01 154 bp overlap

KLF4 1 dataset

ChIP HAP1 GSE130417.KLF4.HAP1 349 bp overlap

MAX 1 dataset

ChIP WA01 ENCSR000EUP.MAX.WA01 305 bp overlap

MEF2A 1 dataset

Motif DE_12h DE_12h-MEF2A_MA0052.5 10 bp overlap

MEF2B 1 dataset

Motif DE_12h DE_12h-MEF2B_MA0660.1 12 bp overlap

MEF2C 1 dataset

Motif DE_12h DE_12h-MEF2C_MA0497.2 11 bp overlap

MEF2D 1 dataset

Motif DE_12h DE_12h-MEF2D_MA0773.1 12 bp overlap

MITF 4 datasets

ChIP 501-mel GSE137522.MITF.501-mel 386 bp overlap

ChIP 501-mel GSE61965.MITF.501-mel 221 bp overlap

ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 334 bp overlap

ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 247 bp overlap

MYC 1 dataset

ChIP BJ_INDUCED GSE36570.MYC.BJ_INDUCED 101 bp overlap

MYCN 1 dataset

ChIP CHP-134 GSE129588.MYCN.CHP-134 449 bp overlap

NANOG 10 datasets

ChIP GM23338 ENCSR061DGF.NANOG.GM23338 176 bp overlap

ChIP HUES-8 GSE109524.NANOG.HUES-8 823 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 357 bp overlap

ChIP WA01 ENCSR000BMT.NANOG.WA01 161 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 457 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 584 bp overlap

ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 398 bp overlap

ChIP hESC GSE20650.NANOG.hESC 260 bp overlap

ChIP hESC GSE18292.NANOG.hESC 185 bp overlap

ChIP hESC GSE18292.NANOG.hESC 147 bp overlap

NEUROD1 1 dataset

Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap

NEUROG2 1 dataset

Motif DE_12h DE_12h-NEUROG2_MA1642.2 7 bp overlap

NKX2-2 1 dataset

Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap

Neurod2 1 dataset

Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 599 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 333 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU4F2 1 dataset

ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 138 bp overlap

POU5F1 4 datasets

ChIP HUES-8 GSE109524.POU5F1.HUES-8 749 bp overlap

ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 630 bp overlap

ChIP OSKM GSE81899.POU5F1.OSKM 159 bp overlap

ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 407 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 618 bp overlap

ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 674 bp overlap

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 512 bp overlap

RBPJ 1 dataset

ChIP MUTUL GSE75503.RBPJ.MUTUL 563 bp overlap

RNF2 1 dataset

ChIP WA09 GSE105028.RNF2.WA09 234 bp overlap

SMAD1 1 dataset

ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap

SMAD3 1 dataset

ChIP BG03 GSE21614.SMAD3.BG03 179 bp overlap

SMARCA4 1 dataset

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 617 bp overlap

SMARCB1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 307 bp overlap

SMARCC1 1 dataset

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 413 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX2 4 datasets

ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 241 bp overlap

ChIP OSKM GSE81899.SOX2.OSKM 176 bp overlap

ChIP hESC GSE18292.SOX2.hESC 180 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 469 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 155 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 485 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 259 bp overlap

TBP 2 datasets

ChIP H1 ENCFF859IIO 377 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 155 bp overlap

TCF12 1 dataset

ChIP WA01 ENCSR000BIT.TCF12.WA01 122 bp overlap

TCF3 1 dataset

ChIP NPC GSE154479.TCF3.NPC 576 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 279 bp overlap

TP63 1 dataset

ChIP foreskin GSE126390.TP63.foreskin 167 bp overlap

USF1 2 datasets

ChIP H1 ENCFF090WVU 241 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 302 bp overlap

USF2 1 dataset

ChIP WTC11 ENCFF139JAW 417 bp overlap

YY1 4 datasets

ChIP H1 ENCFF524BTL 337 bp overlap

ChIP H1 ENCFF524BTL 247 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 414 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 203 bp overlap

ZNF143 1 dataset

ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 221 bp overlap

ZNF418 1 dataset

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF462 2 datasets

ChIP GM23338 ENCFF896CCA 250 bp overlap

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 189 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap