chr3 : 147,389,823 – 147,390,190
367 bp 61 TFs 2 linked genes
This 367 bp open chromatin element is linked to ZIC4 and ZIC1 and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZIC4 2.2 kb Proximal Proximity
ZIC1 3.2 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:147,384,823 – 147,395,190
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 275 bp overlap
ATF1 2 datasets
ChIP K-562 ENCSR091GVJ.ATF1.K-562 332 bp overlap
ChIP K562 ENCFF817JQF 367 bp overlap
ATF2 10 datasets
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
Motif DE_24h DE_24h-ATF2_MA1632.2 10 bp overlap
Motif ES_0h ES_0h-ATF2_MA1632.2 10 bp overlap
ChIP GM12878 ENCFF066HPG 305 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 266 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 268 bp overlap
ChIP HepG2 ENCFF955VER 227 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 247 bp overlap
ChIP K562 ENCFF139ZZG 147 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 135 bp overlap
ATF3 8 datasets
Motif DE_12h DE_12h-ATF3_MA0605.3 10 bp overlap
Motif DE_24h DE_24h-ATF3_MA0605.3 10 bp overlap
Motif ES_0h ES_0h-ATF3_MA0605.3 10 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 294 bp overlap
ChIP K-562 ENCSR632DCH.ATF3.K-562 203 bp overlap
ChIP K562 ENCFF604FPV 156 bp overlap
ChIP K562 ENCFF921JQW 367 bp overlap
ChIP K562 ENCFF921JQW 367 bp overlap
ATF7 6 datasets
Motif DE_12h DE_12h-ATF7_MA0834.2 10 bp overlap
Motif DE_24h DE_24h-ATF7_MA0834.2 10 bp overlap
Motif ES_0h ES_0h-ATF7_MA0834.2 10 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 264 bp overlap
ChIP HepG2 ENCFF470FKK 187 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 250 bp overlap
Atf1 3 datasets
Motif DE_12h DE_12h-Atf1_MA0604.1 8 bp overlap
Motif DE_24h DE_24h-Atf1_MA0604.1 8 bp overlap
Motif ES_0h ES_0h-Atf1_MA0604.1 8 bp overlap
BACH2 3 datasets
Motif DE_12h DE_12h-BACH2_MA1470.2 19 bp overlap
Motif DE_24h DE_24h-BACH2_MA1470.2 19 bp overlap
Motif ES_0h ES_0h-BACH2_MA1470.2 19 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 325 bp overlap
CEBPA 3 datasets
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 103 bp overlap
ChIP MV4-11 GSE88746.CEBPA.MV4-11 228 bp overlap
ChIP THP-1_EtOH_24h GSE124032.CEBPA.THP-1_EtOH_24h 166 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 76 bp overlap
ChIP HepG2 ENCFF536NTI 106 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 181 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 85 bp overlap
CREB1 15 datasets
Motif DE_12h DE_12h-CREB1_MA0018.5 8 bp overlap
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCFF432ZEW 225 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 270 bp overlap
ChIP H1 ENCFF955PMP 223 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 291 bp overlap
ChIP HepG2 ENCFF792THT 265 bp overlap
ChIP LNCaP-abl GSE63034.CREB1.LNCaP-abl 134 bp overlap
ChIP LNCaP-abl_SHCTR GSE63034.CREB1.LNCaP-abl_SHCTR 303 bp overlap
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 184 bp overlap
ChIP MCF-7 ENCFF867SAS 255 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 155 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 175 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 207 bp overlap
CREB3 3 datasets
Motif DE_12h DE_12h-CREB3_MA0638.2 12 bp overlap
Motif DE_24h DE_24h-CREB3_MA0638.2 12 bp overlap
Motif ES_0h ES_0h-CREB3_MA0638.2 12 bp overlap
CREB3L4 3 datasets
Motif DE_12h DE_12h-CREB3L4_MA1475.2 9 bp overlap
Motif DE_24h DE_24h-CREB3L4_MA1475.2 9 bp overlap
Motif ES_0h ES_0h-CREB3L4_MA1475.2 9 bp overlap
CREM 4 datasets
Motif DE_12h DE_12h-CREM_MA0609.3 10 bp overlap
Motif DE_24h DE_24h-CREM_MA0609.3 10 bp overlap
Motif ES_0h ES_0h-CREM_MA0609.3 10 bp overlap
ChIP K-562 ENCSR077DKV.CREM.K-562 159 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF093OYK 212 bp overlap
ChIP BLaER1 ENCFF274GAT 207 bp overlap
ChIP BLaER1 ENCFF364PUR 171 bp overlap
Creb5 3 datasets
Motif DE_12h DE_12h-Creb5_MA0840.2 10 bp overlap
Motif DE_24h DE_24h-Creb5_MA0840.2 10 bp overlap
Motif ES_0h ES_0h-Creb5_MA0840.2 10 bp overlap
E2F1 2 datasets
ChIP K-562 ENCSR720HUL.E2F1.K-562 314 bp overlap
ChIP K562 ENCFF191BFW 272 bp overlap
E2F6 1 dataset
Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap
E2F7 1 dataset
Motif DE_12h DE_12h-E2F7_MA0758.1 14 bp overlap
EZH2 12 datasets
ChIP GM23338 ENCFF613YON 84 bp overlap
ChIP H1 ENCFF232NZA 367 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 129 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 249 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 202 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 357 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 274 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 367 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 221 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 367 bp overlap
ChIP neural progenitor cell ENCFF018MKA 367 bp overlap
ChIP neural progenitor cell ENCFF472NFV 367 bp overlap
FOS 3 datasets
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
Motif DE_24h DE_24h-FOS_MA1951.2 13 bp overlap
Motif ES_0h ES_0h-FOS_MA1951.2 13 bp overlap
FOS::JUN 3 datasets
Motif DE_12h DE_12h-FOSJUN_MA1126.2 10 bp overlap
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
Motif ES_0h ES_0h-FOSJUN_MA1126.2 10 bp overlap
FOSB::JUN 3 datasets
Motif DE_12h DE_12h-FOSBJUN_MA1127.1 11 bp overlap
Motif DE_24h DE_24h-FOSBJUN_MA1127.1 11 bp overlap
Motif ES_0h ES_0h-FOSBJUN_MA1127.1 11 bp overlap
FOSB::JUNB 3 datasets
Motif DE_12h DE_12h-FOSBJUNB_MA1136.1 10 bp overlap
Motif DE_24h DE_24h-FOSBJUNB_MA1136.1 10 bp overlap
Motif ES_0h ES_0h-FOSBJUNB_MA1136.1 10 bp overlap
FOSL1::JUN 3 datasets
Motif DE_12h DE_12h-FOSL1JUN_MA1129.1 10 bp overlap
Motif DE_24h DE_24h-FOSL1JUN_MA1129.1 10 bp overlap
Motif ES_0h ES_0h-FOSL1JUN_MA1129.1 10 bp overlap
FOSL1::JUND 3 datasets
Motif DE_12h DE_12h-FOSL1JUND_MA1143.2 9 bp overlap
Motif DE_24h DE_24h-FOSL1JUND_MA1143.2 9 bp overlap
Motif ES_0h ES_0h-FOSL1JUND_MA1143.2 9 bp overlap
FOSL2::JUN 3 datasets
Motif DE_12h DE_12h-FOSL2JUN_MA1131.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUN_MA1131.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2JUN_MA1131.2 10 bp overlap
FOSL2::JUNB 3 datasets
Motif DE_12h DE_12h-FOSL2JUNB_MA1139.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUNB_MA1139.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2JUNB_MA1139.2 10 bp overlap
FOSL2::JUND 3 datasets
Motif DE_12h DE_12h-FOSL2JUND_MA1145.2 10 bp overlap
Motif DE_24h DE_24h-FOSL2JUND_MA1145.2 10 bp overlap
Motif ES_0h ES_0h-FOSL2JUND_MA1145.2 10 bp overlap
GATA2 1 dataset
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 169 bp overlap
GATA3_Nter 1 dataset
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 202 bp overlap
JDP2 3 datasets
Motif DE_12h DE_12h-JDP2_MA0656.2 10 bp overlap
Motif DE_24h DE_24h-JDP2_MA0656.2 10 bp overlap
Motif ES_0h ES_0h-JDP2_MA0656.2 10 bp overlap
JUN 12 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
Motif DE_24h DE_24h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S08-DE-d1-JUN-exp1 288 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 334 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 317 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 354 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 311 bp overlap
Motif ES_0h ES_0h-JUN_MA0488.2 10 bp overlap
ChIP H1 ENCFF621PNP 171 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 367 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 366 bp overlap
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 160 bp overlap
JUN::JUNB 3 datasets
Motif DE_12h DE_12h-JUNJUNB_MA1133.2 11 bp overlap
Motif DE_24h DE_24h-JUNJUNB_MA1133.2 11 bp overlap
Motif ES_0h ES_0h-JUNJUNB_MA1133.2 11 bp overlap
JUNB 3 datasets
Motif DE_12h DE_12h-JUNB_MA1140.3 11 bp overlap
Motif DE_24h DE_24h-JUNB_MA1140.3 11 bp overlap
Motif ES_0h ES_0h-JUNB_MA1140.3 11 bp overlap
JUND 7 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
Motif DE_24h DE_24h-JUND_MA0492.2 11 bp overlap
Motif ES_0h ES_0h-JUND_MA0492.2 11 bp overlap
ChIP H1 ENCFF010YXS 252 bp overlap
ChIP HepG2 ENCFF869OPW 205 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 202 bp overlap
ChIP WA01 ENCSR000BKP.JUND.WA01 113 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 119 bp overlap
NR2C1 1 dataset
Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap
Nr1H2 1 dataset
Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 165 bp overlap
PRDM9 1 dataset
Motif DE_12h DE_12h-PRDM9_MA1723.2 20 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_24h DE_24h-RARA_MA0729.1 18 bp overlap
Motif ES_0h ES_0h-RARA_MA0729.1 18 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RXRG 3 datasets
Motif DE_12h DE_12h-RXRG_MA1556.1 14 bp overlap
Motif DE_24h DE_24h-RXRG_MA1556.1 14 bp overlap
Motif ES_0h ES_0h-RXRG_MA1556.1 14 bp overlap
SMAD2 2 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
Motif ES_0h ES_0h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 59 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 256 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 343 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 346 bp overlap
SUZ12 3 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 139 bp overlap
ChIP H1 ENCFF881NFR 367 bp overlap
ChIP NT2/D1 ENCFF574SXS 213 bp overlap
TAF1 1 dataset
ChIP neural ENCSR000BTX.TAF1.neural 128 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 210 bp overlap
Tbx6 1 dataset
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
XBP1 3 datasets
Motif DE_12h DE_12h-XBP1_MA0844.2 11 bp overlap
Motif DE_24h DE_24h-XBP1_MA0844.2 11 bp overlap
Motif ES_0h ES_0h-XBP1_MA0844.2 11 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 254 bp overlap
ZNF449 2 datasets
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
Motif ES_0h ES_0h-ZNF449_MA1656.2 10 bp overlap
ZNF740 1 dataset
Motif DE_12h DE_12h-ZNF740_MA0753.3 10 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
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