chr3 : 131,386,183 131,386,578
395 bp 53 TFs 2 linked genes
This 395 bp open chromatin element is linked to NUDT16 and NUDT16-DT and is bound by 53 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
NUDT16 4.4 kb Proximal Proximity
NUDT16-DT 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:131,381,183 – 131,391,578
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 45 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 95 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 148 bp overlap
ChIP DU145 GSE47987.AR.DU145 112 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 101 bp overlap
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 103 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 96 bp overlap
ChIP LNCaP GSE85558.AR.LNCaP 88 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 125 bp overlap
ChIP LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h GSE89938.AR.LNCaP_Bag1L_KO_Bag1L_Rescue_DHT_4h 74 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 86 bp overlap
ChIP LNCaP_DSG GSE114737.AR.LNCaP_DSG 53 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 109 bp overlap
ChIP LNCaP_R1881 GSE62492.AR.LNCaP_R1881 126 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 116 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 77 bp overlap
ChIP LNCaP_SHFOXA1_RPMIFBS GSE69043.AR.LNCaP_SHFOXA1_RPMIFBS 64 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 79 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 127 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 97 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-Y GSE114732.AR.LNCaP_androgen-Y_hypoxia-Y 97 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 93 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 127 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 141 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 99 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 118 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 127 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 140 bp overlap
ChIP VCaP_DHT GSE79128.AR.VCaP_DHT 186 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 355 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 395 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 321 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 205 bp overlap
ChIP VCaP_DHTTHZ1 GSE125245.AR.VCaP_DHTTHZ1 109 bp overlap
ChIP VCaP_R1881 GSE79128.AR.VCaP_R1881 142 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 117 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 122 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 130 bp overlap
ChIP VCaP_SH1_DHT GSE79128.AR.VCaP_SH1_DHT 200 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 166 bp overlap
ChIP VCaP_SH2_DHT GSE79128.AR.VCaP_SH2_DHT 190 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 159 bp overlap
ChIP VCaP_SH3_DHT GSE79128.AR.VCaP_SH3_DHT 183 bp overlap
ChIP epididymis_HEE_R1881 GSE109061.AR.epididymis_HEE_R1881 73 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 96 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 86 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET GSE138084.BRD2.THP-1_iBET 222 bp overlap
BRD4 7 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 144 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.BRD4.SUM159PT_DMSO_24h 109 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 157 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 126 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 117 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 174 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 144 bp overlap
CDX2 1 dataset
ChIP adult-duodenal-cell GSE115314.CDX2.adult-duodenal-cell 130 bp overlap
CTCF 5 datasets
ChIP Peyer's patch ENCFF701KWW 125 bp overlap
ChIP Peyer's patch ENCFF746TCR 136 bp overlap
ChIP Peyers-patch ENCSR419ANE.CTCF.Peyers-patch 106 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 87 bp overlap
ChIP upper lobe of left lung ENCFF962AIJ 221 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 297 bp overlap
E2F1 1 dataset
ChIP MCF-7 ENCFF692OYJ 162 bp overlap
EP300 7 datasets
ChIP gastroesophageal sphincter ENCFF211FPL 93 bp overlap
ChIP sigmoid colon ENCFF524QSR 56 bp overlap
ChIP tibial nerve ENCFF346AYA 291 bp overlap
ChIP tibial nerve ENCFF952OPK 135 bp overlap
ChIP upper lobe of left lung ENCFF024QBJ 93 bp overlap
ChIP upper lobe of left lung ENCFF306FRW 148 bp overlap
ChIP upper lobe of left lung ENCFF720RAR 71 bp overlap
ERG 3 datasets
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 67 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 110 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 142 bp overlap
ESR1 6 datasets
ChIP MCF-7 GSE45822.ESR1.MCF-7 163 bp overlap
ChIP MCF-7_DMSO GSE125594.ESR1.MCF-7_DMSO 266 bp overlap
ChIP MCF-7_E2 GSE60270.ESR1.MCF-7_E2 194 bp overlap
ChIP MCF-7_E2_Dex GSE81510.ESR1.MCF-7_E2_Dex 197 bp overlap
ChIP MCF-7_E2_TNF GSE59530.ESR1.MCF-7_E2_TNF 245 bp overlap
ChIP U2OS_10nM-E2-B GSE151039.ESR1.U2OS_10nM-E2-B 344 bp overlap
ESR2 2 datasets
ChIP MDA-MB-231_LY500307 GSE108979.ESR2.MDA-MB-231_LY500307 224 bp overlap
ChIP MDA-MB-231_estradiol GSE108979.ESR2.MDA-MB-231_estradiol 380 bp overlap
ETS1 1 dataset
ChIP HUVEC-C_VEGF_12H GSE41166.ETS1.HUVEC-C_VEGF_12H 96 bp overlap
FOS 1 dataset
ChIP endothelial cell of umbilical vein ENCFF415XBG 215 bp overlap
FOXA1 2 datasets
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 97 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 86 bp overlap
GATA2 3 datasets
ChIP endothelial cell of umbilical vein ENCFF148NLK 321 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 106 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EVW.GATA2.endothelial_umbilical-vein 313 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 166 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-2 297 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 317 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 348 bp overlap
HDAC2 1 dataset
ChIP VCaP_DHAT_2H GSE28950.HDAC2.VCaP_DHAT_2H 115 bp overlap
HDAC3 1 dataset
ChIP VCaP_DHAT_2H GSE28950.HDAC3.VCaP_DHAT_2H 89 bp overlap
HMGB2 1 dataset
ChIP HUVEC-C GSE98245.HMGB2.HUVEC-C 104 bp overlap
HNF4A 3 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 119 bp overlap
ChIP gastric-epithelial-cell_OE GSE114018.HNF4A.gastric-epithelial-cell_OE 102 bp overlap
ChIP liver ENCFF449HPV 55 bp overlap
HNF4G 1 dataset
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 83 bp overlap
JMJD1C 1 dataset
ChIP Kasumi-1 GSE63484.JMJD1C.Kasumi-1 51 bp overlap
KDM1A 3 datasets
ChIP K562 ENCFF128TYE 330 bp overlap
ChIP K562 ENCFF133OLU 329 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 276 bp overlap
MAF 1 dataset
ChIP lymphocyte_Th17_IL10+_Day5 GSE101389.MAF.lymphocyte_Th17_IL10+_Day5 83 bp overlap
MAX 6 datasets
ChIP NB4 ENCFF966MWB 94 bp overlap
ChIP endothelial cell of umbilical vein ENCFF100YIN 69 bp overlap
ChIP endothelial_umbilical-vein ENCSR000EEZ.MAX.endothelial_umbilical-vein 67 bp overlap
ChIP liver ENCFF092GVW 158 bp overlap
ChIP liver ENCFF584QGB 64 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 121 bp overlap
MED1 6 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.MED1.SUM159PT_100nMtrametinib_24h 105 bp overlap
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 75 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 133 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 218 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 133 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 232 bp overlap
MED12 2 datasets
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 57 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 143 bp overlap
MYC 2 datasets
ChIP P493-6 GSE77061.MYC.P493-6 56 bp overlap
ChIP endothelial_umbilical-vein ENCSR000DLU.MYC.endothelial_umbilical-vein 57 bp overlap
NCOA2 1 dataset
ChIP THP-1_Dex GSE99887.NCOA2.THP-1_Dex 145 bp overlap
NR2F1 1 dataset
ChIP K562 ENCFF221HJH 352 bp overlap
NR2F2 6 datasets
ChIP K-562 ENCSR000BRS.NR2F2.K-562 154 bp overlap
ChIP liver ENCFF427MRU 302 bp overlap
ChIP liver ENCFF565JGD 287 bp overlap
ChIP liver ENCFF565JGD 136 bp overlap
ChIP liver ENCSR168SMX.NR2F2.liver 361 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 267 bp overlap
NR2F6 3 datasets
ChIP Hep-G2 ENCSR518WPL.NR2F6.Hep-G2 143 bp overlap
ChIP HepG2 ENCFF429VKC 289 bp overlap
ChIP K-562 ENCSR707QWA.NR2F6.K-562 267 bp overlap
NR3C1 27 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 115 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 91 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 83 bp overlap
ChIP ALL_DEX GSE109946.NR3C1.ALL_DEX 162 bp overlap
ChIP BEAS-2B_DEX GSE125623.NR3C1.BEAS-2B_DEX 134 bp overlap
ChIP HCC70 GSE152203.NR3C1.HCC70 119 bp overlap
ChIP IMR-90 ERP007093.NR3C1.IMR-90 99 bp overlap
ChIP LNCaP_1F5 GSE30623.NR3C1.LNCaP_1F5 97 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 101 bp overlap
ChIP MCF-10A_DEX_60min GSE102355.NR3C1.MCF-10A_DEX_60min 191 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 164 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 124 bp overlap
ChIP MDA-MB-231 GSE152203.NR3C1.MDA-MB-231 289 bp overlap
ChIP NALM-6 GSE67046.NR3C1.NALM-6 120 bp overlap
ChIP RS4-11_DEX GSE71616.NR3C1.RS4-11_DEX 117 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 207 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 163 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 107 bp overlap
ChIP THP-1_Dex GSE99887.NR3C1.THP-1_Dex 157 bp overlap
ChIP U2OS_GLUCC ERP007081.NR3C1.U2OS_GLUCC 75 bp overlap
ChIP U2OS_SHHIC5 GSE65847.NR3C1.U2OS_SHHIC5 150 bp overlap
ChIP U2OS_SHNS GSE65847.NR3C1.U2OS_SHNS 165 bp overlap
ChIP U2OS_siBRMsiHic5 GSE109383.NR3C1.U2OS_siBRMsiHic5 132 bp overlap
ChIP U2OS_siHic5siNS GSE109383.NR3C1.U2OS_siHic5siNS 137 bp overlap
ChIP hMSC_DMI GSE68864.NR3C1.hMSC_DMI 153 bp overlap
ChIP macrophage_TA GSE109438.NR3C1.macrophage_TA 99 bp overlap
ChIP monocyte_TA GSE109438.NR3C1.monocyte_TA 93 bp overlap
PGR 10 datasets
ChIP AB32 GSE31129.PGR.AB32 132 bp overlap
ChIP HUVEC-C_PR_PROGESTERON GSE43786.PGR.HUVEC-C_PR_PROGESTERON 100 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 144 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 140 bp overlap
ChIP T-47D-B_R5020 GSE80358.PGR.T-47D-B_R5020 104 bp overlap
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 134 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 142 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 119 bp overlap
ChIP T-47D_R5020-MTVL GSE126859.PGR.T-47D_R5020-MTVL 102 bp overlap
ChIP T-47D_progesterone_siCEBPA GSE132649.PGR.T-47D_progesterone_siCEBPA 87 bp overlap
PGR_B 1 dataset
ChIP hESC GSE62475.PGR_B.hESC 104 bp overlap
POLR2A 10 datasets
ChIP breast epithelium ENCFF960NNA 91 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 251 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 76 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 172 bp overlap
ChIP sigmoid colon ENCFF725QFT 160 bp overlap
ChIP spleen ENCFF044PYR 139 bp overlap
ChIP spleen ENCFF446ZGT 75 bp overlap
ChIP transverse colon ENCFF607LKE 61 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 105 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 237 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 395 bp overlap
RAD21 1 dataset
ChIP liver ENCFF485PAC 81 bp overlap
RBFOX2 2 datasets
ChIP HepG2 ENCFF554DMZ 262 bp overlap
ChIP HepG2 ENCFF939HTZ 262 bp overlap
RCOR1 1 dataset
ChIP K562 ENCFF216EEJ 211 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 395 bp overlap
RXRA 2 datasets
ChIP liver ENCFF077DAP 315 bp overlap
ChIP liver ENCFF807CIA 324 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 395 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 395 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 395 bp overlap
STAT3 1 dataset
ChIP monocyte_IL10 GSE120943.STAT3.monocyte_IL10 91 bp overlap
TCF3 1 dataset
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 101 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 95 bp overlap