chr3 : 55,936,643 55,937,661
1,018 bp 111 TFs 0 linked genes
This 1.0 kb open chromatin element has no linked target genes and is bound by 111 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:55,931,643 – 55,942,661
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
111 transcription factors
Source
Cell type
ATF2 7 datasets
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 344 bp overlap
ChIP HEK293 ENCFF194VKZ 385 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 312 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 428 bp overlap
ChIP HepG2 ENCFF955VER 306 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 312 bp overlap
ChIP K562 ENCFF139ZZG 391 bp overlap
ATF7 2 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 346 bp overlap
ChIP HepG2 ENCFF470FKK 381 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CEBPA 1 dataset
ChIP Kasumi-1_CEBPA-ER GSE102697.CEBPA.Kasumi-1_CEBPA-ER 136 bp overlap
CEBPB 4 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP HL-60_CEBPB_overexpressed GSE100486.CEBPB.HL-60_CEBPB_overexpressed 101 bp overlap
ChIP MV4-11 GSE88746.CEBPB.MV4-11 244 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 155 bp overlap
CREB1 7 datasets
ChIP H1 ENCFF955PMP 321 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 345 bp overlap
ChIP HepG2 ENCFF792THT 391 bp overlap
ChIP MCF-7 ENCFF341ZEM 417 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 230 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 206 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 187 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 319 bp overlap
Cebpa 8 datasets
ChIP BLaER1 ENCFF093OYK 276 bp overlap
ChIP BLaER1 ENCFF093OYK 153 bp overlap
ChIP BLaER1 ENCFF335XTP 204 bp overlap
ChIP BLaER1 ENCFF364PUR 380 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF460KDD 266 bp overlap
ChIP BLaER1 ENCFF844FIP 358 bp overlap
ChIP BLaER1 ENCFF896HSY 467 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
Dlx2 1 dataset
Motif DE_48h DE_48h-Dlx2_MA0885.3 8 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
Dlx5 1 dataset
Motif DE_48h DE_48h-Dlx5_MA1476.3 8 bp overlap
EOMES 5 datasets
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 310 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 184 bp overlap
FEZF2 1 dataset
Motif DE_48h DE_48h-FEZF2_MA2341.1 8 bp overlap
FOXA2 2 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 65 bp overlap
ChIP DE DE-FOXA2-2 354 bp overlap
FOXD3 1 dataset
Motif DE_48h DE_48h-FOXD3_MA0041.3 14 bp overlap
GATA2 1 dataset
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 437 bp overlap
ChIP DE DE-GATA4-2 432 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 335 bp overlap
GATA5 1 dataset
Motif DE_48h DE_48h-GATA5_MA0766.3 8 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 412 bp overlap
ChIP DE DE-GATA6-2 443 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 529 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 488 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 458 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 646 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 516 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 491 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 447 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
GLIS1 1 dataset
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 258 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HLF 1 dataset
ChIP HepG2 ENCFF854JLR 245 bp overlap
HOXA4 2 datasets
Motif DE_48h DE_48h-HOXA4_MA1496.2 7 bp overlap
Motif DE_60h DE_60h-HOXA4_MA1496.2 7 bp overlap
HOXA5 1 dataset
Motif DE_48h DE_48h-HOXA5_MA0158.2 8 bp overlap
HOXA6 1 dataset
Motif DE_48h DE_48h-HOXA6_MA1497.2 7 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXB4 2 datasets
Motif DE_48h DE_48h-HOXB4_MA1499.2 6 bp overlap
Motif DE_60h DE_60h-HOXB4_MA1499.2 6 bp overlap
HOXB6 1 dataset
Motif DE_48h DE_48h-HOXB6_MA1500.2 7 bp overlap
HOXB7 1 dataset
Motif DE_48h DE_48h-HOXB7_MA1501.2 7 bp overlap
HOXB8 1 dataset
Motif DE_48h DE_48h-HOXB8_MA1502.2 7 bp overlap
HOXC4 2 datasets
Motif DE_48h DE_48h-HOXC4_MA1504.2 6 bp overlap
Motif DE_60h DE_60h-HOXC4_MA1504.2 6 bp overlap
HOXD4 2 datasets
Motif DE_48h DE_48h-HOXD4_MA1507.2 6 bp overlap
Motif DE_60h DE_60h-HOXD4_MA1507.2 6 bp overlap
HOXD8 1 dataset
Motif DE_48h DE_48h-HOXD8_MA0910.3 7 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
IRF7 1 dataset
Motif DE_48h DE_48h-IRF7_MA0772.2 13 bp overlap
KDM5B 1 dataset
ChIP WA01 ENCSR000AUR.KDM5B.WA01 149 bp overlap
KLF9 3 datasets
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MEIS1 1 dataset
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
MGA 1 dataset
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MXI1 3 datasets
Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap
Motif DE_48h DE_48h-MXI1_MA1108.3 6 bp overlap
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 465 bp overlap
NFIB 1 dataset
Motif DE_48h DE_48h-NFIB_MA1643.2 17 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
ONECUT3 1 dataset
Motif DE_48h DE_48h-ONECUT3_MA0757.2 12 bp overlap
OSR2 2 datasets
ChIP HEK293 ENCFF875BDB 421 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 328 bp overlap
PAX1 3 datasets
Motif DE_36h DE_36h-PAX1_MA0779.2 16 bp overlap
Motif DE_48h DE_48h-PAX1_MA0779.2 16 bp overlap
Motif DE_60h DE_60h-PAX1_MA0779.2 16 bp overlap
PAX6 3 datasets
Motif DE_36h DE_36h-PAX6_MA0069.1 14 bp overlap
Motif DE_48h DE_48h-PAX6_MA0069.1 14 bp overlap
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
PAX8 3 datasets
Motif DE_36h DE_36h-PAX8_MA2094.1 16 bp overlap
Motif DE_48h DE_48h-PAX8_MA2094.1 16 bp overlap
Motif DE_60h DE_60h-PAX8_MA2094.1 16 bp overlap
PAX9 3 datasets
Motif DE_36h DE_36h-PAX9_MA0781.2 16 bp overlap
Motif DE_48h DE_48h-PAX9_MA0781.2 16 bp overlap
Motif DE_60h DE_60h-PAX9_MA0781.2 16 bp overlap
PBX3 1 dataset
Motif DE_48h DE_48h-PBX3_MA1114.2 11 bp overlap
PHOX2A 1 dataset
Motif DE_48h DE_48h-PHOX2A_MA0713.1 11 bp overlap
PKNOX1 1 dataset
Motif DE_48h DE_48h-PKNOX1_MA0782.3 10 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF607ZPU 325 bp overlap
POU6F1 2 datasets
Motif DE_48h DE_48h-POU6F1_MA1549.2 7 bp overlap
Motif DE_60h DE_60h-POU6F1_MA1549.2 7 bp overlap
POU6F2 2 datasets
Motif DE_48h DE_48h-POU6F2_MA0793.2 9 bp overlap
Motif DE_60h DE_60h-POU6F2_MA0793.2 9 bp overlap
PRDM1 1 dataset
ChIP fetal_testis GSE100639.PRDM1.fetal_testis 159 bp overlap
Pax7 1 dataset
Motif DE_48h DE_48h-Pax7_MA0680.3 10 bp overlap
Prdm15 2 datasets
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
Motif DE_60h DE_60h-Prdm15_MA1616.2 11 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RREB1 1 dataset
Motif DE_48h DE_48h-RREB1_MA0073.2 19 bp overlap
Runx1 3 datasets
Motif DE_36h DE_36h-Runx1_MA0002.3 9 bp overlap
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 355 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 420 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 366 bp overlap
SOX10 3 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_48h DE_48h-SOX10_MA0442.3 6 bp overlap
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 315 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 442 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 237 bp overlap
SOX4 3 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Sox11 3 datasets
Motif DE_36h DE_36h-Sox11_MA0869.3 8 bp overlap
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox6 1 dataset
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Stat2 1 dataset
Motif DE_48h DE_48h-Stat2_MA1623.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 296 bp overlap
TBR1 1 dataset
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 4 datasets
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
Tbx6 1 dataset
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 257 bp overlap
ZNF135 1 dataset
Motif DE_48h DE_48h-ZNF135_MA1587.1 14 bp overlap
ZNF143 2 datasets
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 189 bp overlap
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 222 bp overlap
ZNF213 1 dataset
Motif DE_48h DE_48h-ZNF213_MA2121.1 12 bp overlap
ZNF384 1 dataset
Motif DE_60h DE_60h-ZNF384_MA1125.2 8 bp overlap
ZNF460 1 dataset
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 499 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 348 bp overlap
ZNF652 1 dataset
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
ZNF708 3 datasets
Motif DE_36h DE_36h-ZNF708_MA1730.2 9 bp overlap
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Znf423 3 datasets
Motif DE_36h DE_36h-Znf423_MA0116.1 15 bp overlap
Motif DE_48h DE_48h-Znf423_MA0116.1 15 bp overlap
Motif DE_60h DE_60h-Znf423_MA0116.1 15 bp overlap