chr3 : 8,964,535 – 8,964,701

166 bp 66 TFs 1 linked gene

This 166 bp open chromatin element is linked to RAD18 and is bound by 66 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
RAD18		1.1 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

66 transcription factors

AR 1 dataset

ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 55 bp overlap

ARID2 3 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 111 bp overlap

ChIP NGP GSE134626.ARID2.NGP 166 bp overlap

ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 166 bp overlap

ASH2L 1 dataset

ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 122 bp overlap

ATF1 1 dataset

ChIP HepG2 ENCFF239LTQ 166 bp overlap

BRD2 4 datasets

ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 50 bp overlap

ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 84 bp overlap

ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 100 bp overlap

ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 166 bp overlap

BRD4 8 datasets

ChIP COLO-205 GSE73319.BRD4.COLO-205 94 bp overlap

ChIP HCC1395 GSE63581.BRD4.HCC1395 141 bp overlap

ChIP HCC1937 GSE124748.BRD4.HCC1937 140 bp overlap

ChIP HT29 GSE73319.BRD4.HT29 94 bp overlap

ChIP MDA-MB-231_JQ1-neg_L GSE136151.BRD4.MDA-MB-231_JQ1-neg_L 59 bp overlap

ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 166 bp overlap

ChIP PC-3 GSE137207.BRD4.PC-3 73 bp overlap

ChIP PC-3_GDC-R GSE137207.BRD4.PC-3_GDC-R 166 bp overlap

CREB1 1 dataset

ChIP HepG2 ENCFF576ERP 164 bp overlap

CREBBP 2 datasets

ChIP PC-3 GSE147455.CREBBP.PC-3 154 bp overlap

ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 157 bp overlap

DPF2 1 dataset

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 108 bp overlap

EHF 1 dataset

ChIP RWPE-1 GSE114241.EHF.RWPE-1 59 bp overlap

ELF3 2 datasets

ChIP PDAC GSE64557.ELF3.PDAC 166 bp overlap

ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 129 bp overlap

EP300 1 dataset

ChIP PC-3 GSE147455.EP300.PC-3 166 bp overlap

FEZF1 1 dataset

ChIP HEK293 GSE76494.FEZF1.HEK293 119 bp overlap

FEZF2 1 dataset

Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap

FOS 1 dataset

ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 137 bp overlap

GRHL2 1 dataset

ChIP PEO1 GSE71018.GRHL2.PEO1 83 bp overlap

HDAC1 2 datasets

ChIP PC-3 GSE147455.HDAC1.PC-3 117 bp overlap

ChIP PC-3_GDC-resist GSE147455.HDAC1.PC-3_GDC-resist 150 bp overlap

HDAC2 2 datasets

ChIP PC-3 GSE147455.HDAC2.PC-3 154 bp overlap

ChIP PC-3_GDC-resist GSE147455.HDAC2.PC-3_GDC-resist 145 bp overlap

HSF1 2 datasets

Motif ES_0h ES_0h-HSF1_MA0486.2 13 bp overlap

ChIP HCT-116_A8_43 GSE152144.HSF1.HCT-116_A8_43 166 bp overlap

HSF2 1 dataset

Motif ES_0h ES_0h-HSF2_MA0770.1 13 bp overlap

HSF4 1 dataset

Motif ES_0h ES_0h-HSF4_MA0771.1 13 bp overlap

JUNB 1 dataset

ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 151 bp overlap

KLF4 1 dataset

ChIP PDAC GSE64557.KLF4.PDAC 119 bp overlap

KLF6 1 dataset

ChIP PDAC GSE64557.KLF6.PDAC 77 bp overlap

MCRS1 2 datasets

ChIP Hep-G2 GSE107730.MCRS1.Hep-G2 166 bp overlap

ChIP Hep-G2 GSE97411.MCRS1.Hep-G2 166 bp overlap

MED1 1 dataset

ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 88 bp overlap

NANOG 2 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 166 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 166 bp overlap

NFATC3 1 dataset

Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap

NIPBL 1 dataset

ChIP GP5D GSE51234.NIPBL.GP5D 88 bp overlap

Nfat5 1 dataset

Motif ES_0h ES_0h-Nfat5_MA0606.3 8 bp overlap

Nfatc1 1 dataset

Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap

PHIP 1 dataset

ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 166 bp overlap

POLR2A 1 dataset

ChIP H1 ENCFF566JSR 166 bp overlap

POU1F1 1 dataset

Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap

POU2F1 4 datasets

ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 166 bp overlap

ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 166 bp overlap

Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap

ChIP HepG2 ENCFF422JZU 166 bp overlap

POU2F2 1 dataset

Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap

POU2F3 1 dataset

Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap

POU3F1 1 dataset

Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap

POU3F4 1 dataset

Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap

POU5F1 2 datasets

Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap

ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 166 bp overlap

POU5F1B 1 dataset

Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap

PPARG 1 dataset

ChIP OE33 GSE143195.PPARG.OE33 86 bp overlap

RAD21 1 dataset

ChIP GP5D GSE51234.RAD21.GP5D 76 bp overlap

RARA 1 dataset

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 63 bp overlap

REST 1 dataset

ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 96 bp overlap

RUNX1 1 dataset

ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 166 bp overlap

RUVBL2 1 dataset

ChIP U2OS_DMSO GSE130507.RUVBL2.U2OS_DMSO 166 bp overlap

SMAD7 1 dataset

ChIP HepG2 ENCFF850FXR 166 bp overlap

SMARCA4 6 datasets

ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 166 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 166 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 166 bp overlap

ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 108 bp overlap

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 166 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 166 bp overlap

SMARCC1 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 102 bp overlap

ChIP HeLa-S3 ENCFF971JGA 131 bp overlap

SOX4 1 dataset

ChIP HCC1954_TGFb GSE104760.SOX4.HCC1954_TGFb 67 bp overlap

SP1 1 dataset

ChIP WA01 ENCSR000BIR.SP1.WA01 133 bp overlap

SS18 2 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SS18.BIN-67_lentivirus-SMARCA4-K785R 73 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 123 bp overlap

TAF1 2 datasets

ChIP H1 ENCFF478SZO 166 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 113 bp overlap

TEAD4 1 dataset

ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 82 bp overlap

TFAP2C 2 datasets

ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 101 bp overlap

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 90 bp overlap

U2AF1L5,U2AF1 1 dataset

ChIP HepG2 ENCFF548XGJ 166 bp overlap

YY1 2 datasets

ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 92 bp overlap

ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap

ZBTB24 1 dataset

ChIP HCT-116 GSE111683.ZBTB24.HCT-116 87 bp overlap

ZFHX3 1 dataset

ChIP HepG2 ENCFF082SJV 166 bp overlap

ZNF207 1 dataset

ChIP MCF-7 ENCSR096KWU.ZNF207.MCF-7 53 bp overlap

ZNF501 1 dataset

ChIP HepG2 ENCFF879XZR 166 bp overlap

ZNF512 2 datasets

ChIP HepG2 ENCFF113IGR 54 bp overlap

ChIP HepG2 ENCFF113IGR 166 bp overlap

ZNF750 1 dataset

ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 62 bp overlap

ZSCAN29 1 dataset

ChIP HepG2 ENCFF212SBM 166 bp overlap