chr2 : 213,288,855 213,289,216
361 bp 70 TFs 2 linked genes
This 361 bp open chromatin element is linked to SPAG16 and SPAG16-DT and is bound by 70 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SPAG16 4.5 kb Proximal Proximity
SPAG16-DT 4.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:213,283,855 – 213,294,216
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
70 transcription factors
Source
Cell type
AR 3 datasets
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 243 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 214 bp overlap
ChIP breast_tumor_Male_30 GSE104399.AR.breast_tumor_Male_30 190 bp overlap
ARID1A 1 dataset
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 277 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 361 bp overlap
BRD4 6 datasets
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 227 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 149 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 327 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 136 bp overlap
ChIP SUM229PE_neg_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_neg_30nMtrametinib_24h 361 bp overlap
ChIP SUM229PE_pos_30nMtrametinib_24h GSE87418.BRD4.SUM229PE_pos_30nMtrametinib_24h 361 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
DAXX 1 dataset
ChIP PC-3 GSE68647.DAXX.PC-3 203 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 211 bp overlap
ELF2 1 dataset
Motif DE_12h DE_12h-ELF2_MA1483.3 10 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 361 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 361 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 361 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 208 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 134 bp overlap
ESR1 11 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 165 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 147 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 165 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 294 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 221 bp overlap
ChIP ZR751 ERP000783.ESR1.ZR751 298 bp overlap
ChIP ZR751 GSE72249.ESR1.ZR751 207 bp overlap
ChIP ZR751_E2 GSE72249.ESR1.ZR751_E2 249 bp overlap
ChIP breast_tumor_Female_6 GSE104399.ESR1.breast_tumor_Female_6 256 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 201 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 325 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 361 bp overlap
ChIP MCF-7 ENCFF282FWZ 359 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 361 bp overlap
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 141 bp overlap
FOSL2 2 datasets
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 116 bp overlap
ChIP hESC GSE69539.FOSL2.hESC 171 bp overlap
FOXA1 42 datasets
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 211 bp overlap
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 361 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 361 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 361 bp overlap
ChIP HEK293_r261g_TFS GSE123618.FOXA1.HEK293_r261g_TFS 139 bp overlap
ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 221 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 227 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 160 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 209 bp overlap
ChIP MCF-7_DEX GSE72249.FOXA1.MCF-7_DEX 244 bp overlap
ChIP MCF-7_E2 GSE72249.FOXA1.MCF-7_E2 249 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 307 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 315 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 361 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 361 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 361 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 304 bp overlap
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 176 bp overlap
ChIP T-47D_JC4744 GSE126004.FOXA1.T-47D_JC4744 204 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 314 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 222 bp overlap
ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 297 bp overlap
ChIP ZR-75-1_estrogen_ab1 GSE112969.FOXA1.ZR-75-1_estrogen_ab1 361 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 361 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 361 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 361 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 361 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 361 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 332 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 361 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 227 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 157 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 267 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 226 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 358 bp overlap
ChIP breast_tumor_Female_1 GSE104399.FOXA1.breast_tumor_Female_1 253 bp overlap
ChIP breast_tumor_Female_2 GSE104399.FOXA1.breast_tumor_Female_2 361 bp overlap
ChIP breast_tumor_Female_6 GSE104399.FOXA1.breast_tumor_Female_6 214 bp overlap
ChIP breast_tumor_Male_1 GSE104399.FOXA1.breast_tumor_Male_1 216 bp overlap
ChIP breast_tumor_Male_14 GSE104399.FOXA1.breast_tumor_Male_14 336 bp overlap
ChIP primary-breast-cancer_B1_DSG GSE114737.FOXA1.primary-breast-cancer_B1_DSG 253 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 361 bp overlap
FOXA2 10 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 257 bp overlap
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 281 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 267 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 188 bp overlap
ChIP BJ1-hTERT_MimosineRelease GSE90454.FOXA2.BJ1-hTERT_MimosineRelease 189 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 361 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 361 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 361 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 361 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 361 bp overlap
GATA2 1 dataset
ChIP ESF GSE108408.GATA2.ESF 114 bp overlap
GATA3 7 datasets
ChIP MCF-7 ENCFF437NQS 138 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 144 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 122 bp overlap
ChIP SK-N-SH ENCFF040SSB 141 bp overlap
ChIP T-47D ENCSR000BMX.GATA3.T-47D 138 bp overlap
ChIP T-47D GSE51274.GATA3.T-47D 125 bp overlap
ChIP T-47D_sc GSE122847.GATA3.T-47D_sc 69 bp overlap
GATA3_Nter 2 datasets
ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 129 bp overlap
ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 75 bp overlap
GATA6 1 dataset
ChIP OACP4-C GSE132680.GATA6.OACP4-C 116 bp overlap
Gfi1B 1 dataset
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 226 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 307 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 343 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 250 bp overlap
ChIP SK-N-SH ENCFF285GEQ 309 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 263 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 266 bp overlap
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 267 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 361 bp overlap
JUND 4 datasets
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 196 bp overlap
ChIP SK-N-SH ENCFF551NEQ 260 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 238 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 164 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 194 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 287 bp overlap
MEF2A 2 datasets
ChIP SK-N-SH ENCFF053MLP 289 bp overlap
ChIP SK-N-SH ENCSR000BVC.MEF2A.SK-N-SH 153 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 270 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 225 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 194 bp overlap
NR3C1 3 datasets
ChIP HCC70 GSE152203.NR3C1.HCC70 87 bp overlap
ChIP ZR751 GSE72249.NR3C1.ZR751 205 bp overlap
ChIP ZR751_DEX GSE72249.NR3C1.ZR751_DEX 273 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
OTX2 1 dataset
ChIP retina_pigment GSE60024.OTX2.retina_pigment 163 bp overlap
PATZ1 1 dataset
ChIP SK-N-SH ENCFF650NCN 312 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 152 bp overlap
PGR 2 datasets
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 361 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 361 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 203 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 243 bp overlap
POLR2A 2 datasets
ChIP stomach ENCFF607ZPU 215 bp overlap
ChIP stomach ENCFF820WZN 212 bp overlap
PPARG 1 dataset
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 181 bp overlap
PRDM6 1 dataset
ChIP HEK293 GSE76494.PRDM6.HEK293 142 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 145 bp overlap
RELA 3 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 275 bp overlap
ChIP Detroit-562_Poly-I GSE91018.RELA.Detroit-562_Poly-I 294 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 271 bp overlap
RUNX2 1 dataset
Motif DE_12h DE_12h-RUNX2_MA0511.2 9 bp overlap
SMARCA4 5 datasets
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 78 bp overlap
ChIP A-549_AG15725 GSE132290.SMARCA4.A-549_AG15725 57 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 355 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 361 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 278 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 277 bp overlap
SMARCC1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 361 bp overlap
SOX9 1 dataset
ChIP HT29 GSE63629.SOX9.HT29 156 bp overlap
STAT3 3 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 104 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 98 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 231 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 217 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 59 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 280 bp overlap
TEAD4 3 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 192 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 169 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 192 bp overlap
TRPS1 1 dataset
ChIP T-47D GSE107013.TRPS1.T-47D 73 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap