chr2 : 206,082,237 – 206,082,708
471 bp 71 TFs 5 linked genes
This 471 bp open chromatin element is linked to 5 target genes and is bound by 71 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
INO80D-AS1 1.9 kb Proximal Proximity
INO80D 3.6 kb Proximal Proximity
NDUFS1 77.1 kb Distal Multiome
EEF1B2 77.2 kb Distal Multiome
ZDBF2 192.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:206,077,237 – 206,087,708
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
71 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ASH2L 3 datasets
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 196 bp overlap
ChIP H1 ENCFF399KAM 471 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 406 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 71 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 219 bp overlap
BRD4 1 dataset
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 182 bp overlap
Bach1::Mafk 1 dataset
Motif DE_60h DE_60h-Bach1Mafk_MA0591.2 12 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 315 bp overlap
CHD7 1 dataset
ChIP H1 ENCFF126NLU 249 bp overlap
CREM 1 dataset
ChIP WTC11 ENCFF209ZUE 231 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 146 bp overlap
EMX1 1 dataset
ChIP WTC11 ENCFF692RZJ 360 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 320 bp overlap
EP300 1 dataset
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 153 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 241 bp overlap
ESR1 2 datasets
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 177 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 258 bp overlap
FOXA1 2 datasets
ChIP HepG2 ENCFF740VZW 285 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.FOXA1.primary-breast-cancer_B2_DSG 248 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 471 bp overlap
ChIP DE DE-FOXA2-2 471 bp overlap
FOXD2 1 dataset
Motif DE_60h DE_60h-FOXD2_MA0847.4 11 bp overlap
FOXD3 1 dataset
Motif DE_60h DE_60h-FOXD3_MA0041.3 14 bp overlap
FOXE1 1 dataset
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 182 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 428 bp overlap
ChIP DE DE-GATA4-2 461 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 388 bp overlap
ChIP DE DE-GATA6-2 399 bp overlap
HMBOX1 3 datasets
ChIP K-562 ENCSR757IIU.HMBOX1.K-562 275 bp overlap
ChIP K562 ENCFF055GAZ 330 bp overlap
ChIP K562 ENCFF317JJX 334 bp overlap
KDM1A 1 dataset
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 196 bp overlap
KMT2A 4 datasets
ChIP HEK293T_N-term_C49 GSE90762.KMT2A.HEK293T_N-term_C49 261 bp overlap
ChIP HEK293T_N-term_shCtrl_TASP1-KO GSE90762.KMT2A.HEK293T_N-term_shCtrl_TASP1-KO 185 bp overlap
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 184 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 397 bp overlap
MAF::NFE2 1 dataset
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MAFG::NFE2L1 1 dataset
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MAFK 1 dataset
Motif DE_60h DE_60h-MAFK_MA0496.4 10 bp overlap
MEN1 1 dataset
ChIP RS4-11_DMSO-D3-180110 GSE127507.MEN1.RS4-11_DMSO-D3-180110 409 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 93 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MYBL2 1 dataset
Motif DE_60h DE_60h-MYBL2_MA0777.1 15 bp overlap
Mafg 1 dataset
Motif DE_60h DE_60h-Mafg_MA0659.4 12 bp overlap
NANOG 5 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 270 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 139 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 232 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 248 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 124 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 320 bp overlap
Nfe2l2 1 dataset
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
PAX6 1 dataset
Motif DE_60h DE_60h-PAX6_MA0069.1 14 bp overlap
POLR2A 2 datasets
ChIP H1 ENCFF566JSR 172 bp overlap
ChIP H1 ENCFF833NJP 313 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 140 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 220 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 262 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 262 bp overlap
PPARG 1 dataset
Motif DE_60h DE_60h-PPARG_MA0066.2 19 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 202 bp overlap
RBFOX2 1 dataset
ChIP HepG2 ENCFF939HTZ 471 bp overlap
SAP130 1 dataset
ChIP HepG2 ENCFF892EHZ 441 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 301 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 471 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 457 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 368 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 451 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 471 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 471 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 431 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 330 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 262 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 245 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 232 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 195 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 177 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 205 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 275 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 440 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 471 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 277 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 154 bp overlap
SPIB 1 dataset
Motif DE_60h DE_60h-SPIB_MA0081.3 13 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 158 bp overlap
TBP 4 datasets
ChIP hESC GSE122298.TBP.hESC 204 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 244 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 207 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 190 bp overlap
TCF12 1 dataset
ChIP HepG2 ENCFF802XCI 471 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 129 bp overlap
ZBTB38 1 dataset
ChIP HepG2 ENCFF875UQX 149 bp overlap
ZIM3 1 dataset
Motif DE_60h DE_60h-ZIM3_MA1709.2 11 bp overlap
ZKSCAN5 1 dataset
Motif DE_60h DE_60h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF136 1 dataset
Motif DE_60h DE_60h-ZNF136_MA1588.1 15 bp overlap
ZNF148 1 dataset
ChIP K-562 ENCSR018MSO.ZNF148.K-562 190 bp overlap
ZNF281 2 datasets
ChIP HepG2 ENCFF585QNU 228 bp overlap
ChIP K562 ENCFF594VNM 272 bp overlap
ZNF460 1 dataset
ChIP HepG2 ENCFF007NNM 227 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 398 bp overlap
ZNF770 1 dataset
ChIP HepG2 ENCFF233UVH 171 bp overlap
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