chr2 : 138,447,903 138,448,618
715 bp 66 TFs 2 linked genes
This 715 bp open chromatin element is linked to SPOPL-DT and SPOPL and is bound by 66 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SPOPL-DT 53.3 kb Distal Multiome
SPOPL 53.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:138,442,903 – 138,453,618
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 20 datasets
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 171 bp overlap
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 184 bp overlap
ChIP VCaP GSE32892.AR.VCaP 203 bp overlap
ChIP VCaP GSE148358.AR.VCaP 320 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 156 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 487 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 458 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 244 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 409 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 630 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 377 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 340 bp overlap
ChIP VCaP_R1881_1C26 GSE32892.AR.VCaP_R1881_1C26 259 bp overlap
ChIP VCaP_R1881_1C30 GSE32892.AR.VCaP_R1881_1C30 336 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 261 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 215 bp overlap
ChIP VCaP_shCt GSE110655.AR.VCaP_shCt 198 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 157 bp overlap
ChIP VCaP_siNON-EtOH GSE122572.AR.VCaP_siNON-EtOH 187 bp overlap
ChIP prostate_P5_T GSE130408.AR.prostate_P5_T 250 bp overlap
ARID5B 1 dataset
ChIP HepG2 ENCFF964FWK 437 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 294 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 213 bp overlap
BAF155 1 dataset
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 200 bp overlap
BCOR 1 dataset
ChIP VCaP_EtOH GSE122572.BCOR.VCaP_EtOH 356 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 347 bp overlap
CDX2 2 datasets
ChIP LS180 GSE31939.CDX2.LS180 109 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 123 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 101 bp overlap
CTCF 2 datasets
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
Motif DE_60h DE_60h-CTCF_MA0139.2 15 bp overlap
ERG 17 datasets
ChIP HUVEC-C GSE128382.ERG.HUVEC-C 199 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 232 bp overlap
ChIP TSU-1621MT_ATRA GSE60477.ERG.TSU-1621MT_ATRA 305 bp overlap
ChIP VCaP GSE28950.ERG.VCaP 336 bp overlap
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 339 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 343 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 230 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 231 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 277 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 324 bp overlap
ChIP aortic-endothelial-cell_D16 GSE139377.ERG.aortic-endothelial-cell_D16 144 bp overlap
ChIP aortic-endothelial-cell_D28 GSE139377.ERG.aortic-endothelial-cell_D28 193 bp overlap
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 180 bp overlap
ChIP aortic-endothelial-cell_D4 GSE139377.ERG.aortic-endothelial-cell_D4 265 bp overlap
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 250 bp overlap
ChIP aortic-endothelial-cell_D5 GSE139377.ERG.aortic-endothelial-cell_D5 147 bp overlap
ChIP aortic-endothelial-cell_D51 GSE139377.ERG.aortic-endothelial-cell_D51 191 bp overlap
ESRRA 1 dataset
Motif DE_60h DE_60h-ESRRA_MA0592.4 9 bp overlap
ETV1 1 dataset
ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 129 bp overlap
EVI1 1 dataset
ChIP SKH1 GSE87283.EVI1.SKH1 232 bp overlap
Esrrg 1 dataset
Motif DE_60h DE_60h-Esrrg_MA0643.2 9 bp overlap
FLI1 1 dataset
ChIP HUVEC-C GSE109695.FLI1.HUVEC-C 213 bp overlap
FOXA1 4 datasets
ChIP HEK293_i176m_TFS GSE123618.FOXA1.HEK293_i176m_TFS 283 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 316 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 101 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 275 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 715 bp overlap
ChIP DE DE-FOXA2-2 715 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 287 bp overlap
GATA2 6 datasets
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 155 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 266 bp overlap
ChIP SKH1_RUNX1-EVI1_KD GSE87283.GATA2.SKH1_RUNX1-EVI1_KD 172 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 322 bp overlap
ChIP VCaP GSE125236.GATA2.VCaP 283 bp overlap
ChIP endothelial cell of umbilical vein ENCFF148NLK 337 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 682 bp overlap
ChIP DE DE-GATA4-2 715 bp overlap
ChIP foregut GSE117136.GATA4.foregut 359 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 715 bp overlap
ChIP DE DE-GATA6-2 715 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 636 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 232 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 308 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 364 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 715 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 715 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 715 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 261 bp overlap
HNF4A 2 datasets
ChIP Hep-G2 ENCSR469FBY.HNF4A.Hep-G2 152 bp overlap
ChIP HepG2 ENCFF146SSF 361 bp overlap
HOXB13 6 datasets
ChIP prostate-cancer_PDX_167 GSE130408.HOXB13.prostate-cancer_PDX_167 133 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 110 bp overlap
ChIP prostate_2480_T GSE130408.HOXB13.prostate_2480_T 353 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 169 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 253 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 272 bp overlap
JUND 1 dataset
ChIP GP5D_SIRAD21 GSE51234.JUND.GP5D_SIRAD21 397 bp overlap
LMO2 2 datasets
ChIP Kasumi-1_SICTR GSE60130.LMO2.Kasumi-1_SICTR 146 bp overlap
ChIP TSU-1621MT GSE60477.LMO2.TSU-1621MT 241 bp overlap
LYL1 1 dataset
ChIP TSU-1621MT GSE60477.LYL1.TSU-1621MT 250 bp overlap
MED1 2 datasets
ChIP VCaP GSE148358.MED1.VCaP 570 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 213 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
NR2C1 1 dataset
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 3 datasets
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_60h DE_60h-NR2F2_MA1111.2 7 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
NRIP1 1 dataset
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 127 bp overlap
Nr1H2 1 dataset
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
POGZ 1 dataset
ChIP HepG2 ENCFF153UUK 517 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 173 bp overlap
PRDM9 1 dataset
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
PROX1 2 datasets
ChIP HepG2 ENCFF016ZJS 460 bp overlap
ChIP HepG2 ENCFF016ZJS 481 bp overlap
Ppara 1 dataset
Motif DE_60h DE_60h-Ppara_MA2338.1 7 bp overlap
RELA 3 datasets
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 215 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 170 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 184 bp overlap
RORA 1 dataset
Motif DE_60h DE_60h-RORA_MA0071.1 10 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 715 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 715 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 571 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 469 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 715 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 315 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 715 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 715 bp overlap
SMC1 1 dataset
ChIP HCAEC GSE101921.SMC1.HCAEC 265 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 650 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 715 bp overlap
SOX21 2 datasets
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Motif DE_60h DE_60h-SOX21_MA0866.1 15 bp overlap
Sox1 2 datasets
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
Motif DE_60h DE_60h-Sox1_MA0870.1 15 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 296 bp overlap
TAL1 4 datasets
ChIP CHRF28811 ERP008568.TAL1.CHRF28811 245 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 159 bp overlap
ChIP RPMI8402 GSE39179.TAL1.RPMI8402 239 bp overlap
ChIP TSU-1621MT GSE60477.TAL1.TSU-1621MT 287 bp overlap
TFAP4 1 dataset
ChIP HepG2 ENCFF932XOY 345 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
Wt1 2 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB7A 1 dataset
ChIP HUDEP-2 GSE103445.ZBTB7A.HUDEP-2 387 bp overlap
ZNF143 1 dataset
ChIP K-562 GSE39263.ZNF143.K-562 230 bp overlap
ZNF558 1 dataset
Motif DE_60h DE_60h-ZNF558_MA2335.1 29 bp overlap
ZNF644 1 dataset
ChIP HepG2 ENCFF352VGJ 337 bp overlap
ZNF652 2 datasets
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 174 bp overlap
ChIP HepG2 ENCFF331VPZ 381 bp overlap
ZNF684 2 datasets
Motif DE_48h DE_48h-ZNF684_MA1600.2 14 bp overlap
Motif DE_60h DE_60h-ZNF684_MA1600.2 14 bp overlap
ZNF7 2 datasets
ChIP HepG2 ENCFF983XQI 281 bp overlap
ChIP K562 ENCFF096OHS 381 bp overlap