chr2 : 134,772,446 134,773,111
665 bp 73 TFs 3 linked genes
This 665 bp open chromatin element is linked to CCNT2-AS1, CCNT2, and RAB3GAP1 and is bound by 73 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
CCNT2-AS1 145.8 kb Distal Multiome+HiCAR
CCNT2 145.9 kb Distal Multiome+HiCAR
RAB3GAP1 279.4 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:134,767,446 – 134,778,111
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 229 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 297 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 564 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 153 bp overlap
CDX1 1 dataset
Motif DE_60h DE_60h-CDX1_MA0878.3 10 bp overlap
CDX2 1 dataset
Motif DE_60h DE_60h-CDX2_MA0465.3 8 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 148 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 230 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 256 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 144 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF262VBH 251 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 352 bp overlap
FERD3L 3 datasets
Motif DE_48h DE_48h-FERD3L_MA1485.1 14 bp overlap
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
Motif DE_72h DE_72h-FERD3L_MA1485.1 14 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 269 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 556 bp overlap
ChIP DE DE-GATA4-2 590 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 479 bp overlap
ChIP foregut GSE117136.GATA4.foregut 302 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 383 bp overlap
GATA6 11 datasets
ChIP AGS GSE51705.GATA6.AGS 225 bp overlap
ChIP DE DE-GATA6-1 551 bp overlap
ChIP DE DE-GATA6-2 606 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 358 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 589 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 316 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 437 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 435 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 383 bp overlap
ChIP OACP4-C GSE132680.GATA6.OACP4-C 493 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 450 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 163 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 303 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 352 bp overlap
IRF2 3 datasets
Motif DE_48h DE_48h-IRF2_MA0051.2 16 bp overlap
Motif DE_60h DE_60h-IRF2_MA0051.2 16 bp overlap
Motif DE_72h DE_72h-IRF2_MA0051.2 16 bp overlap
IRF3 3 datasets
Motif DE_48h DE_48h-IRF3_MA1418.2 17 bp overlap
Motif DE_60h DE_60h-IRF3_MA1418.2 17 bp overlap
Motif DE_72h DE_72h-IRF3_MA1418.2 17 bp overlap
IRF4 3 datasets
Motif DE_48h DE_48h-IRF4_MA1419.2 14 bp overlap
Motif DE_60h DE_60h-IRF4_MA1419.2 14 bp overlap
Motif DE_72h DE_72h-IRF4_MA1419.2 14 bp overlap
IRF8 3 datasets
Motif DE_48h DE_48h-IRF8_MA0652.2 13 bp overlap
Motif DE_60h DE_60h-IRF8_MA0652.2 13 bp overlap
Motif DE_72h DE_72h-IRF8_MA0652.2 13 bp overlap
IRF9 3 datasets
Motif DE_48h DE_48h-IRF9_MA0653.1 15 bp overlap
Motif DE_60h DE_60h-IRF9_MA0653.1 15 bp overlap
Motif DE_72h DE_72h-IRF9_MA0653.1 15 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 273 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 271 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 158 bp overlap
LIN54 3 datasets
Motif DE_48h DE_48h-LIN54_MA0619.2 7 bp overlap
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
Motif DE_72h DE_72h-LIN54_MA0619.2 7 bp overlap
MAX 2 datasets
ChIP H1 ENCFF601FOM 325 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 283 bp overlap
MEIS1 3 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
NR6A1 3 datasets
Motif DE_48h DE_48h-NR6A1_MA1541.2 14 bp overlap
Motif DE_60h DE_60h-NR6A1_MA1541.2 14 bp overlap
Motif DE_72h DE_72h-NR6A1_MA1541.2 14 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 62 bp overlap
POU4F3 2 datasets
Motif DE_48h DE_48h-POU4F3_MA0791.2 12 bp overlap
Motif DE_60h DE_60h-POU4F3_MA0791.2 12 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 203 bp overlap
RBPJ 3 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif DE_72h DE_72h-RBPJ_MA1116.2 6 bp overlap
RFX1 6 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 403 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 333 bp overlap
ChIP K562 ENCFF421AVO 276 bp overlap
ChIP K562 ENCFF809XVG 190 bp overlap
ChIP MCF-7 ENCFF782EZS 434 bp overlap
ChIP MCF-7 ENCSR066TET.RFX1.MCF-7 278 bp overlap
Runx1 3 datasets
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
Motif DE_60h DE_60h-Runx1_MA0002.3 9 bp overlap
Motif DE_72h DE_72h-Runx1_MA0002.3 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 163 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 435 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 388 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 377 bp overlap
SOX12 3 datasets
Motif DE_48h DE_48h-SOX12_MA1561.2 10 bp overlap
Motif DE_60h DE_60h-SOX12_MA1561.2 10 bp overlap
Motif DE_72h DE_72h-SOX12_MA1561.2 10 bp overlap
SOX13 3 datasets
Motif DE_48h DE_48h-SOX13_MA1120.2 7 bp overlap
Motif DE_60h DE_60h-SOX13_MA1120.2 7 bp overlap
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX14 3 datasets
Motif DE_48h DE_48h-SOX14_MA1562.2 9 bp overlap
Motif DE_60h DE_60h-SOX14_MA1562.2 9 bp overlap
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 281 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 362 bp overlap
SOX2 4 datasets
Motif DE_48h DE_48h-SOX2_MA0143.5 7 bp overlap
Motif DE_60h DE_60h-SOX2_MA0143.5 7 bp overlap
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
SOX4 3 datasets
Motif DE_48h DE_48h-SOX4_MA0867.3 8 bp overlap
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 3 datasets
Motif DE_48h DE_48h-SOX8_MA0868.3 7 bp overlap
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 3 datasets
Motif DE_48h DE_48h-SOX9_MA0077.2 8 bp overlap
Motif DE_60h DE_60h-SOX9_MA0077.2 8 bp overlap
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SRF 2 datasets
ChIP H1 ENCFF036PEF 225 bp overlap
ChIP Ishikawa ENCFF992QXM 305 bp overlap
Six3 3 datasets
Motif DE_48h DE_48h-Six3_MA0631.2 11 bp overlap
Motif DE_60h DE_60h-Six3_MA0631.2 11 bp overlap
Motif DE_72h DE_72h-Six3_MA0631.2 11 bp overlap
Sox11 3 datasets
Motif DE_48h DE_48h-Sox11_MA0869.3 8 bp overlap
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox17 3 datasets
Motif DE_48h DE_48h-Sox17_MA0078.3 10 bp overlap
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 3 datasets
Motif DE_48h DE_48h-Sox3_MA0514.3 7 bp overlap
Motif DE_60h DE_60h-Sox3_MA0514.3 7 bp overlap
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 3 datasets
Motif DE_48h DE_48h-Sox5_MA0087.3 8 bp overlap
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 3 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 3 datasets
Motif DE_48h DE_48h-Sox7_MA2095.1 10 bp overlap
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Stat5b 3 datasets
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
Motif DE_72h DE_72h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 292 bp overlap
TEAD1 1 dataset
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 186 bp overlap
TEAD4 6 datasets
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP Ishikawa ENCFF772OTG 301 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 138 bp overlap
ChIP PC-9_1DF_DMSO GSE131687.TEAD4.PC-9_1DF_DMSO 290 bp overlap
ChIP PC-9_2DF GSE131687.TEAD4.PC-9_2DF 384 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 345 bp overlap
TFCP2 1 dataset
Motif DE_60h DE_60h-TFCP2_MA1968.2 9 bp overlap
THAP1 3 datasets
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
YY1 5 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 346 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 161 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 420 bp overlap
YY1AP1 2 datasets
ChIP PC-9_1DF GSE131687.YY1AP1.PC-9_1DF 326 bp overlap
ChIP PC-9_2DF GSE131687.YY1AP1.PC-9_2DF 436 bp overlap
ZBTB24 3 datasets
Motif DE_48h DE_48h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB24_MA2330.1 10 bp overlap
Motif DE_72h DE_72h-ZBTB24_MA2330.1 10 bp overlap
ZNF416 3 datasets
Motif DE_48h DE_48h-ZNF416_MA1979.2 10 bp overlap
Motif DE_60h DE_60h-ZNF416_MA1979.2 10 bp overlap
Motif DE_72h DE_72h-ZNF416_MA1979.2 10 bp overlap
ZNF449 3 datasets
Motif DE_48h DE_48h-ZNF449_MA1656.2 10 bp overlap
Motif DE_60h DE_60h-ZNF449_MA1656.2 10 bp overlap
Motif DE_72h DE_72h-ZNF449_MA1656.2 10 bp overlap
ZNF692 3 datasets
Motif DE_48h DE_48h-ZNF692_MA1986.2 8 bp overlap
Motif DE_60h DE_60h-ZNF692_MA1986.2 8 bp overlap
Motif DE_72h DE_72h-ZNF692_MA1986.2 8 bp overlap
ZNF708 3 datasets
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
Motif DE_60h DE_60h-ZNF708_MA1730.2 9 bp overlap
Motif DE_72h DE_72h-ZNF708_MA1730.2 9 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 220 bp overlap
ZSCAN31 1 dataset
Motif DE_60h DE_60h-ZSCAN31_MA1722.2 18 bp overlap
Zic1::Zic2 4 datasets
Motif DE_48h DE_48h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_72h DE_72h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_48h DE_48h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_72h DE_72h-Zic2_MA1629.2 9 bp overlap
Zic3 4 datasets
Motif DE_48h DE_48h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif DE_72h DE_72h-Zic3_MA0697.3 7 bp overlap