chr1:34,792,757–34,793,260

chr1 : 34,792,757 – 34,793,260

503 bp 67 TFs 6 linked genes

This 503 bp open chromatin element is linked to 6 target genes and is bound by 67 transcription factors.

Linked Genes

6 genes

Gene	Expression	Dist. to TSS	Distance	Link type
GJA4		at TSS	At TSS	Proximity
SMIM12		66.8 kb	Distal	Multiome+HiCAR
TMEM35B		192.4 kb	Distal	Multiome
ZMYM6		239.0 kb	Distal	Multiome
ZMYM1		286.5 kb	Distal	Multiome
KIAA0319L		764.7 kb	Distal	Multiome+HiCAR

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

67 transcription factors

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 244 bp overlap

BCL11A 1 dataset

ChIP MDA-MB-157 ERP003925.BCL11A.MDA-MB-157 421 bp overlap

BCOR 3 datasets

ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 143 bp overlap

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 503 bp overlap

ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 438 bp overlap

BRD4 3 datasets

ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 111 bp overlap

ChIP hESC GSE33281.BRD4.hESC 78 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 240 bp overlap

ChIP ME-1 GSE46044.CBFB.ME-1 193 bp overlap

ChIP KB GSE52469.CDK6.KB 146 bp overlap

ChIP HCT-116 GSE72622.CDK9.HCT-116 205 bp overlap

ChIP artery_tibial ENCSR699BEK.CTCF.artery_tibial 251 bp overlap

CTCFL 1 dataset

ChIP K-562 GSE70764.CTCFL.K-562 318 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 147 bp overlap

ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 118 bp overlap

ChIP GM12878 ENCSR000BMB.ELF1.GM12878 197 bp overlap

EP300 1 dataset

ChIP tibial nerve ENCFF346AYA 275 bp overlap

ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 286 bp overlap

ChIP K-562 GSE23730.ERG.K-562 161 bp overlap

ChIP K-562_DOX GSE23730.ERG.K-562_DOX 306 bp overlap

ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 416 bp overlap

ChIP Ishikawa GSE99905.ESR1.Ishikawa 239 bp overlap

ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 258 bp overlap

EZH2 27 datasets

ChIP A-673 ENCSR179SAO.EZH2.A-673 251 bp overlap

ChIP GM23248 ENCFF404ZHM 89 bp overlap

ChIP GM23248 ENCFF506FWX 78 bp overlap

ChIP H1 ENCFF232NZA 443 bp overlap

ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 135 bp overlap

ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 207 bp overlap

ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 503 bp overlap

ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 238 bp overlap

ChIP astrocyte ENCFF365JTP 280 bp overlap

ChIP endothelial cell of umbilical vein ENCFF539AKL 503 bp overlap

ChIP endothelial cell of umbilical vein ENCFF539AKL 426 bp overlap

ChIP endothelial_umbilical-vein ENCSR000ATA.EZH2.endothelial_umbilical-vein 503 bp overlap

ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 229 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 318 bp overlap

ChIP fibroblast of dermis ENCFF029VZK 295 bp overlap

ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 73 bp overlap

ChIP hepatocyte ENCFF552DZB 350 bp overlap

ChIP hepatocyte ENCFF552DZB 503 bp overlap

ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 345 bp overlap

ChIP keratinocyte ENCFF070STK 277 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 141 bp overlap

ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 252 bp overlap

ChIP mammary epithelial cell ENCFF224GAI 322 bp overlap

ChIP mammary epithelial cell ENCFF224GAI 95 bp overlap

ChIP neural progenitor cell ENCFF472NFV 503 bp overlap

ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 503 bp overlap

ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 226 bp overlap

EZH2_phosphoT487 2 datasets

ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 174 bp overlap

ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 503 bp overlap

ChIP UAE GSE23730.FLI1.UAE 295 bp overlap

FOXO1 1 dataset

ChIP CD34 GSE80773.FOXO1.CD34 163 bp overlap

GABPA 1 dataset

ChIP WA01 ENCSR000BIW.GABPA.WA01 125 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 282 bp overlap

HDAC2 1 dataset

ChIP WA01 ENCSR000AVB.HDAC2.WA01 127 bp overlap

JARID2 3 datasets

ChIP AMIPS6 GSE48516.JARID2.AMIPS6 213 bp overlap

ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 264 bp overlap

ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 498 bp overlap

KDM4A 6 datasets

ChIP H1 ENCFF078LED 487 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 151 bp overlap

ChIP WA01 ENCSR000AVC.KDM4A.WA01 275 bp overlap

ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 274 bp overlap

ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 281 bp overlap

ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 231 bp overlap

KDM5B 1 dataset

ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 117 bp overlap

KDM6B 1 dataset

ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 204 bp overlap

KLF9 2 datasets

ChIP GBM1A GSE62211.KLF9.GBM1A 123 bp overlap

ChIP GBM1A GSE62211.KLF9.GBM1A 85 bp overlap

KMT2A 1 dataset

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 503 bp overlap

ChIP THP-1_macrophage_PMA GSE96800.MAF1.THP-1_macrophage_PMA 286 bp overlap

MYOD1 1 dataset

ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 246 bp overlap

NANOG 2 datasets

ChIP WA01 ERP004238.NANOG.WA01 240 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 247 bp overlap

NELFE 1 dataset

ChIP K-562_HS GSE112379.NELFE.K-562_HS 79 bp overlap

NR2F2 1 dataset

ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 306 bp overlap

NR3C1 1 dataset

ChIP A-549 ENCSR000BJR.NR3C1.A-549 146 bp overlap

OGG1 3 datasets

ChIP HEK293 GSE89017.OGG1.HEK293 287 bp overlap

ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 286 bp overlap

ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 291 bp overlap

PCGF1 1 dataset

ChIP WA01 GSE104690.PCGF1.WA01 503 bp overlap

ChIP WA01 ENCSR000ATK.PHF8.WA01 226 bp overlap

POLR2A 20 datasets

ChIP adrenal gland ENCFF843OBJ 463 bp overlap

ChIP adrenal gland ENCFF892SFM 267 bp overlap

ChIP body of pancreas ENCFF675RCN 480 bp overlap

ChIP esophagus muscularis mucosa ENCFF791ZXN 321 bp overlap

ChIP gastrocnemius medialis ENCFF145VIB 155 bp overlap

ChIP gastrocnemius medialis ENCFF145VIB 255 bp overlap

ChIP gastroesophageal sphincter ENCFF070PCA 341 bp overlap

ChIP heart left ventricle ENCFF591JWH 219 bp overlap

ChIP sigmoid colon ENCFF725QFT 182 bp overlap

ChIP sigmoid colon ENCFF748YVT 150 bp overlap

ChIP spleen ENCFF446ZGT 344 bp overlap

ChIP spleen ENCFF706IUS 347 bp overlap

ChIP stomach ENCFF607ZPU 325 bp overlap

ChIP stomach ENCFF820WZN 345 bp overlap

ChIP upper lobe of left lung ENCFF199JUI 189 bp overlap

ChIP upper lobe of left lung ENCFF640VPA 222 bp overlap

ChIP uterus ENCFF208ADI 412 bp overlap

ChIP uterus ENCFF566ZPY 325 bp overlap

ChIP vagina ENCFF384GAB 318 bp overlap

ChIP vagina ENCFF384GAB 311 bp overlap

POU5F1 5 datasets

ChIP BG03 GSE21614.POU5F1.BG03 202 bp overlap

ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 165 bp overlap

ChIP DE_D1 DED1-OCT4_Batch_II 503 bp overlap

ChIP SKM-1 GSE93706.POU5F1.SKM-1 286 bp overlap

ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 267 bp overlap

PRDM14 1 dataset

ChIP NCCIT GSE71675.PRDM14.NCCIT 142 bp overlap

ChIP TSU-1621MT GSE60477.RARA.TSU-1621MT 281 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 440 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 262 bp overlap

ChIP HUVEC-C GSE121890.RELA.HUVEC-C 308 bp overlap

RORC 2 datasets

ChIP HCC70 GSE126380.RORC.HCC70 503 bp overlap

ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 503 bp overlap

RUNX1 2 datasets

ChIP Jurkat GSE85524.RUNX1.Jurkat 334 bp overlap

ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 262 bp overlap

ChIP WA01 GSE104690.RYBP.WA01 437 bp overlap

SIN3A 1 dataset

ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 262 bp overlap

SIRT6 2 datasets

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 159 bp overlap

ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 199 bp overlap

SMAD2-3 2 datasets

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 65 bp overlap

ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 214 bp overlap

SMARCA4 2 datasets

ChIP hiPSC GSE124903.SMARCA4.hiPSC 259 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 225 bp overlap

SMARCB1 1 dataset

ChIP hiPSC GSE124903.SMARCB1.hiPSC 189 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 503 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 461 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 434 bp overlap

STAT3 1 dataset

ChIP WA01 ERP004237.STAT3.WA01 301 bp overlap

SUZ12 5 datasets

ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 503 bp overlap

ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 503 bp overlap

ChIP LNCaP GSE39459.SUZ12.LNCaP 503 bp overlap

ChIP hiPSC GSE124903.SUZ12.hiPSC 374 bp overlap

ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 410 bp overlap

ChIP ME-1 GSE46044.TAL1.ME-1 274 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 126 bp overlap

ChIP hESC GSE122298.TBP.hESC 241 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 362 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 325 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 201 bp overlap

ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 263 bp overlap

ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 180 bp overlap

TRIM25 1 dataset

ChIP BT-549 GSE79588.TRIM25.BT-549 304 bp overlap

TRIM28 1 dataset

ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 127 bp overlap

VEZF1 1 dataset

ChIP K562 ENCFF053XDV 503 bp overlap

ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 503 bp overlap

ZBTB7A 4 datasets

ChIP Ishikawa ENCFF191NFH 503 bp overlap

ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 470 bp overlap

ChIP K-562 ENCSR000BME.ZBTB7A.K-562 124 bp overlap

ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 296 bp overlap

ZNF534 1 dataset

ChIP HEK293T GSE78099.ZNF534.HEK293T 260 bp overlap

ZNF90 1 dataset

ChIP HEK293T GSE78099.ZNF90.HEK293T 189 bp overlap