chr2 : 69,450,768 69,451,516
748 bp 69 TFs 4 linked genes
This 748 bp open chromatin element is linked to 4 target genes and is bound by 69 transcription factors.
Linked Genes
4 genes
Gene Expression Dist. to TSS Distance Link type
NFU1 13.7 kb Distal Multiome
GFPT1 63.9 kb Distal Multiome
AAK1 192.6 kb Distal Multiome
ANXA4 290.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:69,445,768 – 69,456,516
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
69 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 232 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 249 bp overlap
BRD3 1 dataset
ChIP H-1_DE GSE126661.BRD3.H-1_DE 155 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 82 bp overlap
CEBPB 2 datasets
ChIP H1 ENCFF871PTR 160 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 120 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 320 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 427 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 97 bp overlap
ESR1 3 datasets
ChIP MCF-7 GSE117492.ESR1.MCF-7 249 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 181 bp overlap
ChIP SUM44PE_ESR1_wildtype GSE100074.ESR1.SUM44PE_ESR1_wildtype 297 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 278 bp overlap
FIGLA 1 dataset
Motif DE_12h DE_12h-FIGLA_MA0820.2 6 bp overlap
FOXA1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 394 bp overlap
FOXA2 3 datasets
ChIP DE DE-FOXA2-1 678 bp overlap
ChIP DE DE-FOXA2-2 748 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 418 bp overlap
GATA1 1 dataset
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 179 bp overlap
GATA2 2 datasets
ChIP WA09 GSE105081.GATA2.WA09 394 bp overlap
ChIP primary-endometrial-stromal-cell_IVD_P2 GSE145673.GATA2.primary-endometrial-stromal-cell_IVD_P2 65 bp overlap
GATA3 1 dataset
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 158 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 748 bp overlap
ChIP DE DE-GATA4-2 688 bp overlap
ChIP foregut GSE117136.GATA4.foregut 446 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 694 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 698 bp overlap
GATA6 16 datasets
ChIP AGS GSE51705.GATA6.AGS 211 bp overlap
ChIP Caco-2_PROLIF GSE23436.GATA6.Caco-2_PROLIF 245 bp overlap
ChIP DE DE-GATA6-1 665 bp overlap
ChIP DE DE-GATA6-2 748 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 731 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 748 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 748 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 674 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 748 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 748 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 613 bp overlap
ChIP foregut GSE117136.GATA6.foregut 667 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 333 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 692 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 599 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 648 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 260 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 157 bp overlap
HLF 2 datasets
ChIP Hep-G2 ENCSR528PSI.HLF.Hep-G2 114 bp overlap
ChIP HepG2 ENCFF854JLR 148 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
JDP2 1 dataset
Motif DE_12h DE_12h-JDP2_MA0655.1 9 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 558 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 308 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 664 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 643 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 372 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 364 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 672 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0491.3 9 bp overlap
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 329 bp overlap
MED1 1 dataset
ChIP SGBS GSE64233.MED1.SGBS 144 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 569 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 509 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 625 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 654 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 599 bp overlap
ChIP hESC GSE20650.NANOG.hESC 183 bp overlap
ChIP hESC GSE18292.NANOG.hESC 265 bp overlap
NFE2 1 dataset
Motif DE_12h DE_12h-NFE2_MA0841.2 10 bp overlap
NIPBL 1 dataset
ChIP WA09 GSE105028.NIPBL.WA09 353 bp overlap
ONECUT1 2 datasets
ChIP H9 ERP004206.ONECUT1.H9 405 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 582 bp overlap
ONECUT2 1 dataset
ChIP AGS_Overexpression GSE113045.ONECUT2.AGS_Overexpression 330 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 190 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 425 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 352 bp overlap
POU5F1 8 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 608 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 725 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 199 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 748 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 686 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 449 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 249 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 554 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1620.2 8 bp overlap
RELA 1 dataset
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 119 bp overlap
SIN3A 2 datasets
ChIP hiPSC_IB12 GSE106870.SIN3A.hiPSC_IB12 165 bp overlap
ChIP hiPSC_IID12 GSE106870.SIN3A.hiPSC_IID12 155 bp overlap
SMAD2 3 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 156 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 420 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 244 bp overlap
SMAD2-3 5 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 667 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 721 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 573 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 115 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 154 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 540 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 667 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 571 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 647 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 664 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 168 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 142 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 212 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 517 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 246 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 370 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 328 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 501 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 471 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 361 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 370 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 149 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 430 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
SP1 4 datasets
ChIP H1 ENCFF263FUH 182 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 54 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 259 bp overlap
ChIP WTC11 ENCFF688PEU 501 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
Sox6 1 dataset
Motif DE_12h DE_12h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_12h DE_12h-Sox7_MA2095.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 357 bp overlap
TBP 1 dataset
ChIP hiPSC_WTa_RNase-neg GSE128135.TBP.hiPSC_WTa_RNase-neg 127 bp overlap
TCF3 2 datasets
ChIP NPC GSE154479.TCF3.NPC 62 bp overlap
ChIP NPC GSE154479.TCF3.NPC 226 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TEAD4 2 datasets
ChIP H1 ENCFF778PAX 110 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 151 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 233 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 608 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 234 bp overlap
TP53 3 datasets
ChIP H9 GSE142050.TP53.H9 516 bp overlap
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
ChIP H9_mesoderm GSE142050.TP53.H9_mesoderm 393 bp overlap
ZEB1 1 dataset
Motif DE_12h DE_12h-ZEB1_MA0103.4 6 bp overlap
ZEB2 1 dataset
ChIP K-562 ENCSR004GKA.ZEB2.K-562 429 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 123 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap