chr2 : 44,680,035 44,680,823
788 bp 73 TFs 0 linked genes
This 788 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:44,675,035 – 44,685,823
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
ARID2 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 251 bp overlap
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 278 bp overlap
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 123 bp overlap
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 788 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 317 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 439 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 356 bp overlap
BRD4 5 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 293 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 162 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 93 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 269 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 434 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 228 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCFF669KMB 352 bp overlap
CSDC2 2 datasets
ChIP SK-N-SH ENCFF868MXA 302 bp overlap
ChIP SK-N-SH ENCFF868MXA 102 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 391 bp overlap
ChIP hESC GSE26097.EOMES.hESC 193 bp overlap
EP300 5 datasets
ChIP SK-N-SH ENCFF829RWA 287 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 562 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 299 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 337 bp overlap
ChIP neural cell ENCFF442QNK 379 bp overlap
ERG 1 dataset
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 203 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 512 bp overlap
ChIP DE DE-FOXA2-2 310 bp overlap
FOXM1 2 datasets
ChIP SK-N-SH ENCFF404RGX 331 bp overlap
ChIP SK-N-SH ENCSR000BTB.FOXM1.SK-N-SH 223 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 484 bp overlap
ChIP SK-N-SH ENCFF764OZD 417 bp overlap
ChIP SK-N-SH ENCFF764OZD 354 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 489 bp overlap
GATA3 3 datasets
ChIP BE2C GSE65664.GATA3.BE2C 421 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 249 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 51 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 358 bp overlap
ChIP DE DE-GATA4-2 413 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 254 bp overlap
ChIP DE DE-GATA6-2 549 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 415 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 319 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 281 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 179 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 540 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 773 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 788 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 262 bp overlap
HAND2 2 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 418 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 486 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 292 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 189 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 706 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 467 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 267 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 260 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 262 bp overlap
JUND 3 datasets
ChIP SK-N-SH ENCFF971JKN 291 bp overlap
ChIP SK-N-SH ENCFF971JKN 112 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 121 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 177 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 324 bp overlap
MAFB 2 datasets
ChIP islet ERP004003.MAFB.islet 186 bp overlap
ChIP islet ERP004003.MAFB.islet 150 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 351 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 98 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 491 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 556 bp overlap
MYC 2 datasets
ChIP NB69 GSE138295.MYC.NB69 170 bp overlap
ChIP SK-N-SH GSE138295.MYC.SK-N-SH 343 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 358 bp overlap
ChIP CHP-134 GSE129588.MYCN.CHP-134 303 bp overlap
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 341 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 674 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 242 bp overlap
ChIP NGP GSE80151.MYCN.NGP 111 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 358 bp overlap
NANOG 7 datasets
ChIP H1 ENCFF747ZPQ 218 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 202 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 255 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 176 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 523 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 345 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 259 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 307 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 175 bp overlap
NKX3-1 2 datasets
ChIP islet ERP004003.NKX3-1.islet 274 bp overlap
ChIP islet ERP004003.NKX3-1.islet 325 bp overlap
PAX7 1 dataset
ChIP H9_DOX GSE98976.PAX7.H9_DOX 235 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 160 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 294 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 577 bp overlap
POLR2A 2 datasets
ChIP neural cell ENCFF604SPB 255 bp overlap
ChIP neural cell ENCFF604SPB 236 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 295 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 196 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 206 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 562 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCFF518EXB 93 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 269 bp overlap
RNF2 3 datasets
ChIP K-562 ENCSR076YPO.RNF2.K-562 117 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 195 bp overlap
ChIP K-562 ENCSR076YPO.RNF2.K-562 160 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 180 bp overlap
SIX2 3 datasets
ChIP HEK GSE73865.SIX2.HEK 496 bp overlap
ChIP kidney_fetal_16w GSE75948.SIX2.kidney_fetal_16w 372 bp overlap
ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 463 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 276 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 375 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 642 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 577 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 429 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 537 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 688 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 660 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 210 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 179 bp overlap
SMARCA4 5 datasets
ChIP NGP GSE134626.SMARCA4.NGP 169 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 503 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 556 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 228 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 485 bp overlap
SMC3 2 datasets
ChIP SK-N-SH ENCFF791WFB 241 bp overlap
ChIP SK-N-SH ENCSR000EHW.SMC3.SK-N-SH 273 bp overlap
SNAI2 4 datasets
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 63 bp overlap
ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 170 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 155 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 244 bp overlap
SS18 1 dataset
ChIP NGP_ARID1A-mut1 GSE134626.SS18.NGP_ARID1A-mut1 371 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 152 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 120 bp overlap
TAF1 1 dataset
ChIP SK-N-SH ENCSR000BQF.TAF1.SK-N-SH 106 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 219 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 656 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 656 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 251 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 232 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 260 bp overlap
TP63 1 dataset
ChIP foreskin GSE126390.TP63.foreskin 88 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 93 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 576 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 420 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 420 bp overlap
USF1 1 dataset
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 266 bp overlap
USF2 1 dataset
ChIP SK-N-SH ENCSR945NFL.USF2.SK-N-SH 245 bp overlap
YY1 4 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 76 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 511 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 93 bp overlap
ZMAT4 1 dataset
ChIP WTC11 ENCFF608UXZ 141 bp overlap
ZNF608 1 dataset
ChIP SK-N-SH ENCFF518LYG 136 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 124 bp overlap