chr1 : 30,837,666 30,838,184
518 bp 67 TFs 3 linked genes
This 518 bp open chromatin element is linked to SDC3, PUM1, and MECR and is bound by 67 transcription factors.
Linked Genes
3 genes
Link type
Gene Expression Dist. to TSS Distance Link type
SDC3 70.9 kb Distal Multiome+HiCAR
PUM1 227.8 kb Distal Multiome
MECR 1606.9 kb Distal Multiome+HiCAR
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:30,832,666 – 30,843,184
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
ATF3 1 dataset
Motif DE_72h DE_72h-ATF3_MA0605.3 10 bp overlap
BRD4 1 dataset
ChIP HEK293_sgMYOD GSE129407.BRD4.HEK293_sgMYOD 215 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 126 bp overlap
CREB1 6 datasets
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
Motif DE_72h DE_72h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 184 bp overlap
ChIP Hep-G2 ENCSR112ALD.CREB1.Hep-G2 282 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 291 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 211 bp overlap
CREM 1 dataset
Motif DE_72h DE_72h-CREM_MA0609.3 10 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 257 bp overlap
ChIP BLaER1 ENCFF896HSY 145 bp overlap
Creb5 1 dataset
Motif DE_72h DE_72h-Creb5_MA0840.2 10 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 289 bp overlap
EZH2 1 dataset
ChIP ProEs_SHCTR GSE59087.EZH2.ProEs_SHCTR 233 bp overlap
FOS 1 dataset
Motif DE_72h DE_72h-FOS_MA1951.2 13 bp overlap
FOS::JUN 1 dataset
Motif DE_72h DE_72h-FOSJUN_MA1126.2 10 bp overlap
FOXA1 1 dataset
ChIP T-47D_E2_TAM ERP000380.FOXA1.T-47D_E2_TAM 164 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 441 bp overlap
ChIP DE DE-FOXA2-2 445 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 436 bp overlap
ChIP DE DE-GATA4-2 468 bp overlap
ChIP foregut GSE117136.GATA4.foregut 361 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 464 bp overlap
ChIP DE DE-GATA6-2 435 bp overlap
ChIP foregut GSE117136.GATA6.foregut 312 bp overlap
HNF1A 2 datasets
ChIP HEE_1 GSE76376.HNF1A.HEE_1 173 bp overlap
ChIP HEE_5 GSE76376.HNF1A.HEE_5 114 bp overlap
HNF1B 1 dataset
ChIP foregut GSE117136.HNF1B.foregut 329 bp overlap
JDP2 1 dataset
Motif DE_72h DE_72h-JDP2_MA0656.2 10 bp overlap
JUN 1 dataset
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
JUND 1 dataset
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
KLF11 1 dataset
Motif DE_72h DE_72h-KLF11_MA1512.2 10 bp overlap
KLF16 1 dataset
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
MED12 1 dataset
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 64 bp overlap
MEIS1 1 dataset
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 222 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 294 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 149 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 273 bp overlap
NFIA 1 dataset
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
PAX3 1 dataset
Motif DE_72h DE_72h-PAX3_MA1546.2 14 bp overlap
REST 1 dataset
ChIP colorectal-cancer_CRC121_dissociated GSE112555.REST.colorectal-cancer_CRC121_dissociated 176 bp overlap
SATB1 3 datasets
ChIP MCF-10A GSE123292.SATB1.MCF-10A 93 bp overlap
ChIP MCF-10A_N-term_CUT1 GSE123292.SATB1.MCF-10A_N-term_CUT1 97 bp overlap
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 158 bp overlap
SIX2 1 dataset
Motif DE_72h DE_72h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 430 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 241 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 329 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 251 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 155 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 430 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 453 bp overlap
SOX2 1 dataset
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 209 bp overlap
SP8 1 dataset
Motif DE_72h DE_72h-SP8_MA0747.2 11 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 281 bp overlap
ZFP42 1 dataset
Motif DE_72h DE_72h-ZFP42_MA1651.2 13 bp overlap
ZNF140 1 dataset
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF257 1 dataset
Motif DE_72h DE_72h-ZNF257_MA1710.2 10 bp overlap
ZNF317 1 dataset
ChIP HEK293 GSE76494.ZNF317.HEK293 163 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 249 bp overlap