chrX : 2,891,906 2,892,349
443 bp 79 TFs 5 linked genes
This 443 bp open chromatin element is linked to 5 target genes and is bound by 79 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
ARSD 37.3 kb Distal Multiome
GYG2 62.8 kb Distal Multiome
XG 140.0 kb Distal Multiome
CD99 200.9 kb Distal Multiome
CD99P1 282.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:2,886,906 – 2,897,349
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP K562 ENCFF583EEH 59 bp overlap
ARID1B 1 dataset
ChIP K562 ENCFF938UXQ 194 bp overlap
ASCL1 1 dataset
Motif DE_72h DE_72h-ASCL1_MA1100.3 8 bp overlap
Ascl2 1 dataset
Motif DE_72h DE_72h-Ascl2_MA0816.1 10 bp overlap
CUX1 2 datasets
ChIP K562 ENCFF902MYN 281 bp overlap
ChIP K562 ENCFF902MYN 443 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 357 bp overlap
DPF2 3 datasets
ChIP K562 ENCFF739JDE 113 bp overlap
ChIP K562 ENCFF739JDE 327 bp overlap
ChIP K562 ENCFF775HUO 201 bp overlap
E2F5 2 datasets
ChIP K562 ENCFF688PUB 235 bp overlap
ChIP K562 ENCFF688PUB 443 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 263 bp overlap
EP300 2 datasets
ChIP H1 ENCFF927IYK 297 bp overlap
ChIP tibial nerve ENCFF346AYA 352 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 443 bp overlap
FOSL1 1 dataset
ChIP K562 ENCFF455MKD 62 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 443 bp overlap
ChIP DE DE-FOXA2-2 443 bp overlap
FOXK2 1 dataset
ChIP K562 ENCFF851PFH 81 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 443 bp overlap
ChIP DE DE-GATA4-2 443 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-1 419 bp overlap
ChIP DE DE-GATA6-2 429 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 406 bp overlap
HDAC1 1 dataset
ChIP K562 ENCFF968WBH 77 bp overlap
HIC2 1 dataset
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
IKZF1 2 datasets
ChIP K562 ENCFF348IBL 127 bp overlap
ChIP K562 ENCFF771OHZ 96 bp overlap
MED1 1 dataset
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 279 bp overlap
MITF 1 dataset
ChIP K562 ENCFF731XJJ 100 bp overlap
MSC 1 dataset
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 150 bp overlap
MYF5 1 dataset
Motif DE_72h DE_72h-MYF5_MA1641.2 8 bp overlap
MYF6 1 dataset
Motif DE_72h DE_72h-MYF6_MA0667.1 10 bp overlap
MYOD1 1 dataset
Motif DE_72h DE_72h-MYOD1_MA0499.3 9 bp overlap
MYOG 1 dataset
Motif DE_72h DE_72h-MYOG_MA0500.3 8 bp overlap
NANOG 4 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 334 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 244 bp overlap
ChIP hESC GSE18292.NANOG.hESC 99 bp overlap
NEUROD1 2 datasets
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 103 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 97 bp overlap
NFIA 1 dataset
ChIP K-562 GSE97661.NFIA.K-562 66 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 121 bp overlap
NHLH1 1 dataset
Motif DE_72h DE_72h-NHLH1_MA0048.3 9 bp overlap
NR2C1 3 datasets
ChIP K562 ENCFF239KMA 97 bp overlap
ChIP K562 ENCFF568JLK 111 bp overlap
ChIP K562 ENCFF568JLK 320 bp overlap
NR2C2 3 datasets
ChIP K-562 ENCSR750LYM.NR2C2.K-562 89 bp overlap
ChIP K562 ENCFF750AXF 404 bp overlap
ChIP K562 ENCFF750AXF 443 bp overlap
NR2F1 2 datasets
ChIP K562 ENCFF221HJH 199 bp overlap
ChIP K562 ENCFF221HJH 204 bp overlap
NR2F6 2 datasets
ChIP K-562 ENCSR707QWA.NR2F6.K-562 81 bp overlap
ChIP K562 ENCFF674RQA 128 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 86 bp overlap
Olig2 1 dataset
Motif DE_72h DE_72h-Olig2_MA1997.2 6 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 402 bp overlap
Ptf1A 1 dataset
Motif DE_72h DE_72h-Ptf1A_MA1619.2 8 bp overlap
SMAD2 2 datasets
ChIP endoderm GSE29422.SMAD2.endoderm 134 bp overlap
ChIP endoderm GSE29422.SMAD2.endoderm 140 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 409 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 443 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 443 bp overlap
SMAD4 3 datasets
ChIP K562 ENCFF628RBP 99 bp overlap
ChIP K562 ENCFF628RBP 345 bp overlap
ChIP endoderm GSE29422.SMAD4.endoderm 247 bp overlap
SMARCE1 1 dataset
ChIP K562 ENCFF690CFF 122 bp overlap
SOX13 1 dataset
Motif DE_72h DE_72h-SOX13_MA1120.2 7 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 386 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 443 bp overlap
SOX2 2 datasets
Motif DE_72h DE_72h-SOX2_MA0143.5 7 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 280 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox3 1 dataset
Motif DE_72h DE_72h-Sox3_MA0514.3 7 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 118 bp overlap
TFAP4 1 dataset
Motif DE_72h DE_72h-TFAP4_MA0691.1 10 bp overlap
TOE1 1 dataset
ChIP K562 ENCFF728FRA 102 bp overlap
Tcf12 1 dataset
Motif DE_72h DE_72h-Tcf12_MA0521.3 6 bp overlap
Tcf21 1 dataset
Motif DE_72h DE_72h-Tcf21_MA0832.2 10 bp overlap
Twist2 1 dataset
Motif DE_72h DE_72h-Twist2_MA0633.3 6 bp overlap
VEZF1 2 datasets
ChIP K562 ENCFF053XDV 63 bp overlap
ChIP K562 ENCFF053XDV 266 bp overlap
ZBTB11 2 datasets
ChIP K562 ENCFF215OUF 443 bp overlap
ChIP K562 ENCFF215OUF 443 bp overlap
ZBTB18 1 dataset
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZBTB9 1 dataset
ChIP K562 ENCFF233EFX 55 bp overlap
ZNF197 1 dataset
ChIP K562 ENCFF872BAU 156 bp overlap
ZNF24 1 dataset
ChIP K562 ENCFF615YYW 119 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 164 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 105 bp overlap
ZNF407 1 dataset
ChIP K562 ENCFF893ASX 50 bp overlap
ZNF584 1 dataset
ChIP K562 ENCFF771INO 115 bp overlap
ZNF589 2 datasets
ChIP K562 ENCFF770FHN 196 bp overlap
ChIP K562 ENCFF770FHN 443 bp overlap
ZNF592 1 dataset
ChIP K562 ENCFF547OSS 324 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF271FQR 109 bp overlap
ZNF740 1 dataset
ChIP K562 ENCFF447IXE 368 bp overlap