chr19 : 29,056,167 29,056,482
315 bp 53 TFs 0 linked genes
This 315 bp open chromatin element has no linked target genes and is bound by 53 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:29,051,167 – 29,061,482
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
53 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 165 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 222 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 126 bp overlap
CEBPB 1 dataset
ChIP WA01 ENCSR000EBV.CEBPB.WA01 178 bp overlap
CREB1 4 datasets
ChIP LNCaP GSE63034.CREB1.LNCaP 121 bp overlap
ChIP MCF-7 ENCFF867SAS 246 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 187 bp overlap
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 192 bp overlap
CTCF 97 datasets
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 287 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 264 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 274 bp overlap
ChIP A-549 ENCSR000DNA.CTCF.A-549 165 bp overlap
ChIP A-549 ENCSR000DPF.CTCF.A-549 138 bp overlap
ChIP A549 ENCFF182TCQ 217 bp overlap
ChIP GM23338 ENCFF531QOI 175 bp overlap
ChIP GM23338 ENCFF772DML 122 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 315 bp overlap
ChIP GP5D_SIRAD21 GSE51234.CTCF.GP5D_SIRAD21 315 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF414GZI 217 bp overlap
ChIP H1 ENCFF764RHO 193 bp overlap
ChIP H9 ENCFF152GTF 292 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 255 bp overlap
ChIP HUES-64_DNMT-KO GSE97394.CTCF.HUES-64_DNMT-KO 258 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 164 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 164 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 206 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP LNCAP ENCFF223HIG 315 bp overlap
ChIP LNCaP ENCSR315NAC.CTCF.LNCaP 271 bp overlap
ChIP LNCaP ENCSR000DMF.CTCF.LNCaP 167 bp overlap
ChIP LNCaP ENCSR000DME.CTCF.LNCaP 128 bp overlap
ChIP LNCaP clone FGC ENCFF519YVI 181 bp overlap
ChIP LNCaP clone FGC ENCFF957KCI 181 bp overlap
ChIP LNCaP_hydroxy_10nM_4h ENCSR673WZL.CTCF.LNCaP_hydroxy_10nM_4h 254 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 102 bp overlap
ChIP MCF-7 ENCFF210JUZ 175 bp overlap
ChIP MCF-7 ENCFF414SZG 191 bp overlap
ChIP MCF-7 ENCFF424NQR 168 bp overlap
ChIP MCF-7 ENCFF494VXA 102 bp overlap
ChIP MCF-7 ENCFF844STM 166 bp overlap
ChIP MCF-7 ENCFF954TUV 112 bp overlap
ChIP MCF-7 GSE137216.CTCF.MCF-7 315 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 275 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 258 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 221 bp overlap
ChIP MCF-7 GSE70764.CTCF.MCF-7 196 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 199 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 145 bp overlap
ChIP MCF-7 ERP000380.CTCF.MCF-7 136 bp overlap
ChIP MCF-7L_TAMR GSE108787.CTCF.MCF-7L_TAMR 205 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 289 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 315 bp overlap
ChIP MCF-7L_t16 GSE108787.CTCF.MCF-7L_t16 315 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 285 bp overlap
ChIP MCF-7L_t4 GSE108787.CTCF.MCF-7L_t4 261 bp overlap
ChIP MCF-7_E2 ERP000380.CTCF.MCF-7_E2 128 bp overlap
ChIP MM1-S GSE43743.CTCF.MM1-S 232 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 315 bp overlap
ChIP RWPE2 ENCFF911IEE 292 bp overlap
ChIP T-47D ENCSR000BNO.CTCF.T-47D 197 bp overlap
ChIP T-47D GSE120162.CTCF.T-47D 211 bp overlap
ChIP T-47D_D538G GSE148277.CTCF.T-47D_D538G 315 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 288 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 256 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 315 bp overlap
ChIP T-47D_serum GSE120162.CTCF.T-47D_serum 166 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 256 bp overlap
ChIP VCaP ENCFF858YQT 315 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 315 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 194 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 142 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 221 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 99 bp overlap
ChIP endodermal cell ENCFF471YCZ 301 bp overlap
ChIP epithelial cell of proximal tubule ENCFF763ZKS 276 bp overlap
ChIP epithelial_proximal_tubule ENCSR000DXD.CTCF.epithelial_proximal_tubule 192 bp overlap
ChIP hESC GSE20650.CTCF.hESC 131 bp overlap
ChIP hESC_D0 GSE116862.CTCF.hESC_D0 264 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 178 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 260 bp overlap
ChIP hepatocyte ENCFF263BLJ 253 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 224 bp overlap
ChIP hiPSC_Angelman GSE117283.CTCF.hiPSC_Angelman 203 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 155 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 216 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 182 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 218 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 192 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 147 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 226 bp overlap
ChIP hiPSC_Prader-Willi GSE117283.CTCF.hiPSC_Prader-Willi 198 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 234 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 265 bp overlap
ChIP kidney ENCFF335EKK 185 bp overlap
ChIP neural progenitor cell ENCFF420RBO 159 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 254 bp overlap
ChIP parathyroid adenoma ENCFF173NJK 315 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 315 bp overlap
ChIP thyroid gland ENCFF204HWS 291 bp overlap
ChIP thyroid gland ENCFF300RYK 315 bp overlap
ChIP thyroid gland ENCFF300RYK 96 bp overlap
ChIP thyroid-gland ENCSR033KMZ.CTCF.thyroid-gland 288 bp overlap
ChIP thyroid-gland ENCSR955BIB.CTCF.thyroid-gland 180 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 161 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 315 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 220 bp overlap
ESR1 8 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 176 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 201 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 177 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 179 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 215 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 191 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 187 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 230 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 129 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 278 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 299 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000EBZ.JUND.WA01 151 bp overlap
KDM5B 1 dataset
ChIP T-47D GSE46055.KDM5B.T-47D 161 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 291 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 267 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 217 bp overlap
ChIP WTC11 ENCFF223QFY 315 bp overlap
ChIP WTC11 ENCFF223QFY 280 bp overlap
MED1 1 dataset
ChIP MCF-7_SHRARS GSE60270.MED1.MCF-7_SHRARS 200 bp overlap
MYC 1 dataset
ChIP MCF-7 ENCSR000DMQ.MYC.MCF-7 215 bp overlap
NANOG 2 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 240 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 179 bp overlap
NFYB 1 dataset
ChIP WTC11 ENCFF751ZTQ 283 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BJR.NR3C1.A-549 122 bp overlap
PKNOX1 2 datasets
ChIP MCF-7 ENCFF116OCS 223 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 264 bp overlap
POU2F1 1 dataset
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 286 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 299 bp overlap
PRKDC 1 dataset
ChIP MCF-7_E2 GSE60270.PRKDC.MCF-7_E2 206 bp overlap
RAD21 24 datasets
ChIP GP5D GSE51234.RAD21.GP5D 315 bp overlap
ChIP GP5D_SIRAD21 GSE51234.RAD21.GP5D_SIRAD21 142 bp overlap
ChIP H1 ENCFF698EWO 203 bp overlap
ChIP H1 ENCFF967OJF 129 bp overlap
ChIP Ishikawa ENCFF570JVV 225 bp overlap
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 130 bp overlap
ChIP MCF-7 ENCFF694KOM 289 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 GSE137216.RAD21.MCF-7 285 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 275 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 262 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 174 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 106 bp overlap
ChIP T-47D GSE111923.RAD21.T-47D 239 bp overlap
ChIP T-47D_triptolide GSE111923.RAD21.T-47D_triptolide 271 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 281 bp overlap
ChIP WA09_heat-shock GSE105028.RAD21.WA09_heat-shock 275 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 190 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 241 bp overlap
ChIP hiPSC_IIA12 GSE106870.RAD21.hiPSC_IIA12 155 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 265 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 254 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.RAD21.hiPSC_failed-genome-editing 239 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 200 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 218 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 269 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 151 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 267 bp overlap
SMC1A 4 datasets
ChIP A-549 GSE76893.SMC1A.A-549 185 bp overlap
ChIP MCF-7 GSE115602.SMC1A.MCF-7 191 bp overlap
ChIP MCF-7 GSE76893.SMC1A.MCF-7 202 bp overlap
ChIP MCF-7_EtOH GSE115602.SMC1A.MCF-7_EtOH 280 bp overlap
SMC3 2 datasets
ChIP GP5D GSE51234.SMC3.GP5D 315 bp overlap
ChIP hESC_D0 GSE116862.SMC3.hESC_D0 180 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 135 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 244 bp overlap
TAF7 2 datasets
ChIP H1 ENCFF061XZZ 132 bp overlap
ChIP H1 ENCFF061XZZ 306 bp overlap
TEAD1 2 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 161 bp overlap
ChIP WTC11 ENCFF502QUV 305 bp overlap
TEAD4 6 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 315 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP MCF-7_BLRP_WT_E2 GSE125594.TEAD4.MCF-7_BLRP_WT_E2 297 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 315 bp overlap
ChIP MCF-7_E2 GSE125594.TEAD4.MCF-7_E2 257 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 288 bp overlap
TFAP2A 1 dataset
ChIP MCF-7_E2 GSE60270.TFAP2A.MCF-7_E2 143 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 315 bp overlap
THAP1 1 dataset
Motif DE_60h DE_60h-THAP1_MA0597.3 8 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 208 bp overlap
USF1 1 dataset
ChIP WA01 ENCSR000BIU.USF1.WA01 295 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 306 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 228 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 209 bp overlap
ZNF331 1 dataset
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 216 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 280 bp overlap
ZXDC 1 dataset
ChIP MCF-7 GSE97661.ZXDC.MCF-7 148 bp overlap