chr19 : 18,248,373 18,248,701
328 bp 72 TFs 2 linked genes
This 328 bp open chromatin element is linked to CIST1 and PDE4C and is bound by 72 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CIST1 6.7 kb Proximal Proximity
PDE4C 6.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:18,243,373 – 18,253,701
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID1B 2 datasets
ChIP K-562 ENCSR822CCM.ARID1B.K-562 299 bp overlap
ChIP K562 ENCFF938UXQ 310 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_BCL11A-ER-V5 GSE103445.BCL11A.HUDEP-2_BCL11A-ER-V5 69 bp overlap
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 328 bp overlap
CBFA2T2 2 datasets
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 321 bp overlap
ChIP K562 ENCFF963TXY 191 bp overlap
CBFA2T3 2 datasets
ChIP K-562 ENCSR697YLJ.CBFA2T3.K-562 328 bp overlap
ChIP K562 ENCFF673OEZ 320 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 99 bp overlap
CEBPD 1 dataset
ChIP K-562 ENCSR000BVY.CEBPD.K-562 199 bp overlap
DPF2 1 dataset
ChIP K-562 ENCSR219BXP.DPF2.K-562 316 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 252 bp overlap
EGR1 6 datasets
ChIP K-562 ENCSR211LTF.EGR1.K-562 328 bp overlap
ChIP K-562 ENCSR024CNP.EGR1.K-562 284 bp overlap
ChIP K-562 ENCSR000BNE.EGR1.K-562 227 bp overlap
ChIP K562 ENCFF006PJY 65 bp overlap
ChIP K562 ENCFF006PJY 245 bp overlap
ChIP K562 ENCFF895KGN 311 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 328 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 258 bp overlap
EP300 2 datasets
ChIP K-562 ENCSR000EGE.EP300.K-562 174 bp overlap
ChIP K562 ENCFF226VMS 287 bp overlap
ESR1 3 datasets
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 70 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 58 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 124 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 163 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 202 bp overlap
EZH2 1 dataset
ChIP LNCaP GSE39459.EZH2.LNCaP 59 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 275 bp overlap
GATA1 3 datasets
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 196 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 286 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 162 bp overlap
GATA2 3 datasets
ChIP K-562 ENCSR000EWG.GATA2.K-562 166 bp overlap
ChIP K-562 ENCSR000BKM.GATA2.K-562 130 bp overlap
ChIP K562 ENCFF544PCK 251 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-2 226 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 251 bp overlap
GATA6 1 dataset
ChIP DE DE-GATA6-1 238 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 111 bp overlap
GTF2I 2 datasets
ChIP K562 ENCFF539BYI 222 bp overlap
ChIP WTC11 ENCFF255XXZ 177 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR711VWL.HDAC1.K-562 328 bp overlap
HDAC2 2 datasets
ChIP K-562 ENCSR893WSB.HDAC2.K-562 328 bp overlap
ChIP K-562 ENCSR075HTM.HDAC2.K-562 155 bp overlap
KDM1A 8 datasets
ChIP K-562 GSE117944.KDM1A.K-562 247 bp overlap
ChIP K-562 ENCSR908CMW.KDM1A.K-562 185 bp overlap
ChIP K-562 ENCSR360HRA.KDM1A.K-562 180 bp overlap
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 191 bp overlap
ChIP K562 ENCFF128TYE 221 bp overlap
ChIP K562 ENCFF133OLU 219 bp overlap
ChIP NB4_DMSO GSE128528.KDM1A.NB4_DMSO 128 bp overlap
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 190 bp overlap
KLF16 1 dataset
ChIP K-562 ENCSR760UVO.KLF16.K-562 178 bp overlap
LDB1 1 dataset
ChIP K-562 GSE142227.LDB1.K-562 321 bp overlap
MAZ 2 datasets
ChIP HEK293 GSE76494.MAZ.HEK293 95 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 279 bp overlap
MEIS2 2 datasets
ChIP K-562 ENCSR851BNE.MEIS2.K-562 250 bp overlap
ChIP K562 ENCFF320GSD 160 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 173 bp overlap
NCOA1 1 dataset
ChIP K-562 ENCSR658WFQ.NCOA1.K-562 247 bp overlap
NCOR1 4 datasets
ChIP K-562 ENCSR798ILC.NCOR1.K-562 328 bp overlap
ChIP K-562 ENCSR910JAI.NCOR1.K-562 193 bp overlap
ChIP K562 ENCFF788MPU 328 bp overlap
ChIP K562 ENCFF866HRM 166 bp overlap
NFIC 3 datasets
ChIP K-562 ENCSR796ITY.NFIC.K-562 328 bp overlap
ChIP K562 ENCFF167YID 73 bp overlap
ChIP K562 ENCFF167YID 328 bp overlap
NFXL1 1 dataset
ChIP K-562 ENCSR085DDI.NFXL1.K-562 105 bp overlap
NKX2-1 2 datasets
ChIP NCI-H1819 GSE39998.NKX2-1.NCI-H1819 58 bp overlap
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 94 bp overlap
NKX2-5 1 dataset
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 62 bp overlap
NR2F2 1 dataset
ChIP K-562 ENCSR000BRS.NR2F2.K-562 165 bp overlap
NR3C1 2 datasets
ChIP BEAS-2B_DEX_IA1 GSE125623.NR3C1.BEAS-2B_DEX_IA1 59 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 174 bp overlap
PBX2 2 datasets
ChIP K-562 ENCSR263DFP.PBX2.K-562 227 bp overlap
ChIP K562 ENCFF286KMN 328 bp overlap
PDX1 2 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 256 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 204 bp overlap
PML 1 dataset
ChIP K-562 ENCSR000BQY.PML.K-562 146 bp overlap
POLR2A 1 dataset
ChIP upper lobe of left lung ENCFF199JUI 59 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 328 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 328 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 142 bp overlap
ChIP K562 ENCFF248CGR 179 bp overlap
ChIP K562 ENCFF957ORK 179 bp overlap
REST 2 datasets
ChIP K-562 ENCSR000BMW.REST.K-562 225 bp overlap
ChIP LNCaP GSE119385.REST.LNCaP 235 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 107 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 280 bp overlap
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 197 bp overlap
SMARCA5 2 datasets
ChIP K-562 ENCSR895HSJ.SMARCA5.K-562 136 bp overlap
ChIP K562 ENCFF936KHY 179 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 328 bp overlap
TAL1 11 datasets
ChIP K-562 GSE107726.TAL1.K-562 328 bp overlap
ChIP K-562 ENCSR000EHB.TAL1.K-562 282 bp overlap
ChIP K-562 ENCSR106FRG.TAL1.K-562 257 bp overlap
ChIP K-562_dCas9-KRAB GSE132212.TAL1.K-562_dCas9-KRAB 201 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.TAL1.K-562_dCas9-LSD1 182 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 242 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.TAL1.K-562_enCRISPRi-LK 220 bp overlap
ChIP K-562_sgGal4 GSE132212.TAL1.K-562_sgGal4 207 bp overlap
ChIP K562 ENCFF620GMX 195 bp overlap
ChIP K562 ENCFF661CCK 96 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 256 bp overlap
TBX5 1 dataset
ChIP cardiomyocyte_5 GSE85628.TBX5.cardiomyocyte_5 57 bp overlap
TCF12 3 datasets
ChIP K-562 ENCSR744WOO.TCF12.K-562 328 bp overlap
ChIP K-562 ENCSR189TRZ.TCF12.K-562 227 bp overlap
ChIP K562 ENCFF931DJY 204 bp overlap
TCF3 1 dataset
ChIP K-562 ENCSR970OJY.TCF3.K-562 210 bp overlap
TEAD4 1 dataset
ChIP K562 ENCFF673NIK 315 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 328 bp overlap
ChIP K562 ENCFF053XDV 277 bp overlap
YY1 1 dataset
ChIP K-562 ENCSR000BMH.YY1.K-562 132 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 260 bp overlap
ZFP36 3 datasets
ChIP GM12878 ENCSR900XDB.ZFP36.GM12878 76 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 204 bp overlap
ChIP K562 ENCFF255RZG 156 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 173 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 187 bp overlap
ChIP K562 ENCFF361LXT 180 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 293 bp overlap
ChIP K562 ENCFF352SDL 328 bp overlap
ZNF24 1 dataset
ChIP K-562 ENCSR099NCH.ZNF24.K-562 156 bp overlap
ZNF398 1 dataset
ChIP HEK293 ENCFF184XEW 161 bp overlap
ZNF768 3 datasets
ChIP HEK293 ENCFF579QSI 163 bp overlap
ChIP HEK293 ENCSR070HWF.ZNF768.HEK293 114 bp overlap
ChIP HepG2 ENCFF388QCK 166 bp overlap