chr19 : 3,494,144 – 3,494,348
204 bp 65 TFs 1 linked gene
This 204 bp open chromatin element is linked to DOHH and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
DOHH 6.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:3,489,144 – 3,499,348
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 160 bp overlap
AR 2 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 171 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 204 bp overlap
ASH1L 2 datasets
ChIP K-562 ENCSR115BBC.ASH1L.K-562 204 bp overlap
ChIP K562 ENCFF808EMX 152 bp overlap
BCL6 2 datasets
ChIP CD4 GSE59933.BCL6.CD4 140 bp overlap
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 164 bp overlap
BRD3 1 dataset
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 175 bp overlap
BRD4 4 datasets
ChIP COLO-741 GSE73319.BRD4.COLO-741 101 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 62 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 204 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 142 bp overlap
CHD2 5 datasets
ChIP H1 ENCFF991MKH 103 bp overlap
ChIP HeLa-S3 ENCSR000ECP.CHD2.HeLa-S3 156 bp overlap
ChIP K-562 ENCSR000EHD.CHD2.K-562 204 bp overlap
ChIP K562 ENCFF857WME 204 bp overlap
ChIP WA01 ENCSR000EBT.CHD2.WA01 197 bp overlap
CTCF 4 datasets
ChIP dorsolateral prefrontal cortex ENCFF267VHH 204 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF277CZQ 172 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF433UFM 204 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF748IBN 186 bp overlap
DDX20 2 datasets
ChIP K-562 ENCSR446LAV.DDX20.K-562 204 bp overlap
ChIP K562 ENCFF205RDN 204 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 204 bp overlap
ELL2 1 dataset
ChIP HeLa_DOX_EGF GSE40632.ELL2.HeLa_DOX_EGF 53 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 108 bp overlap
ESR1 2 datasets
ChIP Ishikawa_E2-1h GSE129803.ESR1.Ishikawa_E2-1h 122 bp overlap
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 204 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 168 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 141 bp overlap
FOS 3 datasets
ChIP HeLa-S3 ENCSR000EZE.FOS.HeLa-S3 113 bp overlap
ChIP K-562 ENCSR000FAI.FOS.K-562 190 bp overlap
ChIP K562 ENCFF951GBI 204 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 176 bp overlap
GFI1B 1 dataset
ChIP K-562 ENCSR509GDT.GFI1B.K-562 163 bp overlap
GTF2F1 2 datasets
ChIP K-562 ENCSR377BLZ.GTF2F1.K-562 161 bp overlap
ChIP K-562 GSE120104.GTF2F1.K-562 160 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 100 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 174 bp overlap
HNF1B 1 dataset
ChIP PANC-1_HNF1B-OE GSE119930.HNF1B.PANC-1_HNF1B-OE 204 bp overlap
JUN 1 dataset
ChIP 786-O GSE86092.JUN.786-O 145 bp overlap
KDM1A 1 dataset
ChIP OCI-Ly1 GSE107920.KDM1A.OCI-Ly1 93 bp overlap
MAX 3 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 150 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 125 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 167 bp overlap
MBD2 2 datasets
ChIP K-562 ENCSR221GAN.MBD2.K-562 193 bp overlap
ChIP K562 ENCFF217VLV 105 bp overlap
MED1 1 dataset
ChIP K-562 GSE97661.MED1.K-562 109 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 181 bp overlap
MXI1 1 dataset
ChIP WA01 ENCSR000EBR.MXI1.WA01 122 bp overlap
MYB 2 datasets
ChIP Jurkat GSE59657.MYB.Jurkat 157 bp overlap
ChIP MOLT-3 GSE59657.MYB.MOLT-3 121 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 173 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 183 bp overlap
NEUROD1 1 dataset
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 163 bp overlap
NFKB1 2 datasets
ChIP HEK293T GSE129618.NFKB1.HEK293T 125 bp overlap
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 94 bp overlap
NFYA 7 datasets
ChIP HeLa-S3 ENCFF016YWF 204 bp overlap
ChIP HeLa-S3 ENCSR000DNS.NFYA.HeLa-S3 204 bp overlap
ChIP Hep-G2 ENCSR124APT.NFYA.Hep-G2 168 bp overlap
ChIP K-562 GSE26439.NFYA.K-562 204 bp overlap
ChIP K-562 ENCSR000EGR.NFYA.K-562 200 bp overlap
ChIP K562 ENCFF666BET 204 bp overlap
ChIP K562 ENCFF732HOX 204 bp overlap
NFYB 10 datasets
ChIP GM12878 ENCFF474DNH 204 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 204 bp overlap
ChIP HeLa-S3 ENCFF854TNJ 204 bp overlap
ChIP HeLa-S3 ENCSR000DNR.NFYB.HeLa-S3 204 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF174VYX 204 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 204 bp overlap
ChIP K-562 GSE26439.NFYB.K-562 204 bp overlap
ChIP K562 ENCFF709RXX 172 bp overlap
ChIP WTC11 ENCFF751ZTQ 188 bp overlap
NFYC 2 datasets
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 204 bp overlap
ChIP HepG2 ENCFF836FYP 202 bp overlap
NIPBL 5 datasets
ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 204 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 204 bp overlap
ChIP HEK293T_CRISPR GSE122299.NIPBL.HEK293T_CRISPR 204 bp overlap
ChIP HEK293T_CRISPR-2 GSE122299.NIPBL.HEK293T_CRISPR-2 200 bp overlap
ChIP HEK293T_WT GSE122299.NIPBL.HEK293T_WT 204 bp overlap
NOTCH1 1 dataset
ChIP HPBALL GSE39263.NOTCH1.HPBALL 204 bp overlap
OLIG2 6 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 204 bp overlap
ChIP brain-prefrontal-cortex_2016029 GSE129039.OLIG2.brain-prefrontal-cortex_2016029 180 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 204 bp overlap
ChIP brain-prefrontal-cortex_2017014 GSE129039.OLIG2.brain-prefrontal-cortex_2017014 204 bp overlap
ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 204 bp overlap
ChIP brain-prefrontal-cortex_2018006 GSE129039.OLIG2.brain-prefrontal-cortex_2018006 204 bp overlap
PBX1 3 datasets
ChIP A-549 ENCSR637RKG.PBX1.A-549 204 bp overlap
ChIP A549 ENCFF475JCE 204 bp overlap
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 204 bp overlap
PBX1-2-3 1 dataset
ChIP 697 GSE138031.PBX1-2-3.697 126 bp overlap
PBX2 5 datasets
ChIP HepG2 ENCFF225AJT 204 bp overlap
ChIP K-562 ENCSR263DFP.PBX2.K-562 204 bp overlap
ChIP K-562 ENCSR633EIC.PBX2.K-562 117 bp overlap
ChIP K562 ENCFF286KMN 204 bp overlap
ChIP K562 ENCFF286KMN 83 bp overlap
PBX3 4 datasets
ChIP A-549 ENCSR000BTN.PBX3.A-549 112 bp overlap
ChIP GM12878 ENCFF285BQQ 143 bp overlap
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 188 bp overlap
ChIP SK-N-SH ENCFF876BMC 198 bp overlap
PCBP1 2 datasets
ChIP Hep-G2 GSE120104.PCBP1.Hep-G2 162 bp overlap
ChIP Hep-G2 ENCSR872EVQ.PCBP1.Hep-G2 170 bp overlap
PKNOX1 8 datasets
ChIP GM12878 ENCFF589FCY 204 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 204 bp overlap
ChIP HEK293T ENCFF174WDB 204 bp overlap
ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 204 bp overlap
ChIP K-562 ENCSR115SMW.PKNOX1.K-562 204 bp overlap
ChIP K562 ENCFF236IUS 204 bp overlap
ChIP MCF-7 ENCFF116OCS 204 bp overlap
ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 204 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 82 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 101 bp overlap
PRKDC 2 datasets
ChIP fibroblast_MET GSE55605.PRKDC.fibroblast_MET 173 bp overlap
ChIP fibroblast_OHT GSE55605.PRKDC.fibroblast_OHT 193 bp overlap
RBFOX2 2 datasets
ChIP K-562 GSE120104.RBFOX2.K-562 204 bp overlap
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 204 bp overlap
RBM25 3 datasets
ChIP K-562 ENCSR791OZM.RBM25.K-562 157 bp overlap
ChIP K562 ENCFF248CGR 204 bp overlap
ChIP K562 ENCFF957ORK 204 bp overlap
RBPJ 1 dataset
ChIP CUTLL1 GSE29600.RBPJ.CUTLL1 172 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 149 bp overlap
RUNX1 3 datasets
ChIP ALL-SIL GSE102209.RUNX1.ALL-SIL 182 bp overlap
ChIP SKH1_10d GSE87283.RUNX1.SKH1_10d 204 bp overlap
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 85 bp overlap
RUNX2 2 datasets
ChIP Karpas-45 GSE151819.RUNX2.Karpas-45 180 bp overlap
ChIP PER-117 GSE151819.RUNX2.PER-117 176 bp overlap
SP1 8 datasets
ChIP A-549 ENCSR000BPE.SP1.A-549 204 bp overlap
ChIP GM12878 ENCFF620LDJ 140 bp overlap
ChIP GM12878 ENCSR000BHK.SP1.GM12878 202 bp overlap
ChIP H1 ENCFF263FUH 174 bp overlap
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 159 bp overlap
ChIP HCT116 ENCFF800LBN 204 bp overlap
ChIP K562 ENCFF365HQT 204 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 199 bp overlap
SP2 9 datasets
ChIP H1 ENCFF903ACN 204 bp overlap
ChIP HEK293 ENCFF181QXT 204 bp overlap
ChIP HEK293 ENCSR807LQP.SP2.HEK293 204 bp overlap
ChIP HEK293 GSE76494.SP2.HEK293 199 bp overlap
ChIP HEK293T ERP007114.SP2.HEK293T 204 bp overlap
ChIP HepG2 ENCFF667RFH 204 bp overlap
ChIP K-562 ENCSR000BNL.SP2.K-562 196 bp overlap
ChIP K562 ENCFF891GNQ 98 bp overlap
ChIP WA01 ENCSR000BQG.SP2.WA01 204 bp overlap
SP4 1 dataset
ChIP HEK293 GSE76494.SP4.HEK293 204 bp overlap
SREBF2 1 dataset
ChIP HeLa-S3 ENCSR611WZO.SREBF2.HeLa-S3 184 bp overlap
YY1 5 datasets
ChIP ALL GSE145549.YY1.ALL 78 bp overlap
ChIP H1 ENCFF524BTL 193 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 186 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 76 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 97 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 71 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 204 bp overlap
ZEB1 1 dataset
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 90 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 166 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 180 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 140 bp overlap
Huangfu Lab · Publications · Resources · Contact