chr18 : 61,127,186 – 61,128,256
1,070 bp 103 TFs 0 linked genes
This 1.1 kb open chromatin element has no linked target genes and is bound by 103 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:61,122,186 – 61,133,256
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
103 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 365 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_36h DE_36h-ARNTHIF1A_MA0259.2 5 bp overlap
ASCL1 3 datasets
ChIP NCI-H128 GSE69394.ASCL1.NCI-H128 120 bp overlap
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 118 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 188 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 140 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 309 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 631 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 444 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 145 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 632 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 502 bp overlap
BHLHE22 4 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
Motif DE_36h DE_36h-BHLHE22_MA1635.2 6 bp overlap
BRD4 4 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 346 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 486 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 647 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 860 bp overlap
Bhlha15 2 datasets
Motif DE_12h DE_12h-Bhlha15_MA1472.3 8 bp overlap
Motif DE_36h DE_36h-Bhlha15_MA1472.3 8 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 710 bp overlap
CTCF 7 datasets
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap
ChIP HAP1_clone21 GSE152721.CTCF.HAP1_clone21 209 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 204 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_1 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_1 285 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 339 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 188 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
DUX4 1 dataset
ChIP WA01 GSE94322.DUX4.WA01 312 bp overlap
EOMES 3 datasets
Motif DE_12h DE_12h-EOMES_MA0800.2 9 bp overlap
Motif DE_36h DE_36h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 331 bp overlap
ETV1 1 dataset
Motif DE_12h DE_12h-ETV1_MA0761.3 9 bp overlap
ETV2::HOXB13 1 dataset
Motif DE_12h DE_12h-ETV2HOXB13_MA1943.2 13 bp overlap
ETV5::FOXO1 1 dataset
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif DE_36h DE_36h-FEZF2_MA2341.1 8 bp overlap
FLI1::FOXI1 1 dataset
Motif DE_12h DE_12h-FLI1FOXI1_MA1950.2 11 bp overlap
FOS 1 dataset
Motif DE_12h DE_12h-FOS_MA1951.2 13 bp overlap
FOXA1 7 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 77 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 54 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 57 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 52 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 56 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 105 bp overlap
ChIP liver ERP002306.FOXA1.liver 57 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 122 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 165 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 64 bp overlap
ChIP DE DE-FOXA2-1 274 bp overlap
ChIP DE DE-FOXA2-2 388 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 214 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_12h DE_12h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif DE_12h DE_12h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXO1::FLI1 1 dataset
Motif DE_12h DE_12h-FOXO1FLI1_MA1956.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 304 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 312 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 243 bp overlap
ChIP DE DE-GATA6-2 302 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 360 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 388 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 331 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 443 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 408 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 339 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 393 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 505 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 464 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 267 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 327 bp overlap
HNF1A 1 dataset
ChIP HEE_1 GSE76376.HNF1A.HEE_1 81 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 222 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
INSM1 1 dataset
Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap
Ikzf3 1 dataset
Motif DE_12h DE_12h-Ikzf3_MA1992.2 9 bp overlap
JUN 1 dataset
ChIP DE_D1 S40-DE-d1-JUN-exp2 123 bp overlap
KDM4A 1 dataset
ChIP WA01 ENCSR000AVC.KDM4A.WA01 227 bp overlap
KLF13 1 dataset
Motif DE_36h DE_36h-KLF13_MA0657.2 17 bp overlap
KLF16 2 datasets
Motif DE_12h DE_12h-KLF16_MA0741.1 11 bp overlap
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_12h DE_12h-KLF17_MA1514.2 14 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 249 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 484 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MGA 2 datasets
Motif DE_12h DE_12h-MGA_MA0801.1 8 bp overlap
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
MGA::EVX1 2 datasets
Motif DE_12h DE_12h-MGAEVX1_MA1960.2 11 bp overlap
Motif DE_36h DE_36h-MGAEVX1_MA1960.2 11 bp overlap
MITF 1 dataset
ChIP 501-mel_K243Q GSE137522.MITF.501-mel_K243Q 238 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 538 bp overlap
MYF5 2 datasets
Motif DE_12h DE_12h-MYF5_MA1641.2 8 bp overlap
Motif DE_36h DE_36h-MYF5_MA1641.2 8 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 352 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 303 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 136 bp overlap
NEUROD1 2 datasets
Motif DE_12h DE_12h-NEUROD1_MA1109.2 8 bp overlap
Motif DE_36h DE_36h-NEUROD1_MA1109.2 8 bp overlap
NFIA 3 datasets
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap
Motif DE_36h DE_36h-NFIA_MA0670.2 6 bp overlap
NFIX 3 datasets
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap
Motif DE_36h DE_36h-NFIX_MA0671.2 6 bp overlap
Neurod2 6 datasets
Motif DE_12h DE_12h-Neurod2_MA0668.3 8 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA0668.3 8 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Motif DE_36h DE_36h-Neurod2_MA1993.2 6 bp overlap
Nr2e3 1 dataset
Motif DE_12h DE_12h-Nr2e3_MA0164.2 6 bp overlap
Olig2 4 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
Motif DE_36h DE_36h-Olig2_MA1997.2 6 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 223 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 360 bp overlap
Plagl1 2 datasets
Motif DE_12h DE_12h-Plagl1_MA1615.2 8 bp overlap
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Prdm15 1 dataset
Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif DE_36h DE_36h-Ptf1A_MA1619.2 8 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 363 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 207 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 325 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 135 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 242 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
Motif DE_36h DE_36h-RBPJ_MA1116.2 6 bp overlap
REST 2 datasets
ChIP neural ENCSR000BTV.REST.neural 212 bp overlap
ChIP neural cell ENCFF882LXX 421 bp overlap
SIX2 2 datasets
Motif DE_12h DE_12h-SIX2_MA1119.2 11 bp overlap
Motif DE_36h DE_36h-SIX2_MA1119.2 11 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1070 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 991 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 986 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 1026 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 987 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 227 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 249 bp overlap
SMARCA4 3 datasets
ChIP NSC GSE125033.SMARCA4.NSC 344 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 257 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 228 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 274 bp overlap
SMARCC1 2 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 396 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 377 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 198 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 263 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 737 bp overlap
ChIP NCI-H520 GSE137459.SOX2.NCI-H520 85 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 108 bp overlap
SOX21 2 datasets
Motif DE_12h DE_12h-SOX21_MA0866.1 15 bp overlap
Motif DE_36h DE_36h-SOX21_MA0866.1 15 bp overlap
Sox1 1 dataset
Motif DE_12h DE_12h-Sox1_MA0870.1 15 bp overlap
Sox17 1 dataset
Motif DE_12h DE_12h-Sox17_MA0078.3 10 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 301 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 316 bp overlap
TBR1 2 datasets
Motif DE_12h DE_12h-TBR1_MA0802.2 9 bp overlap
Motif DE_36h DE_36h-TBR1_MA0802.2 9 bp overlap
TBX18 2 datasets
Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap
Motif DE_36h DE_36h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_12h DE_12h-TBX2_MA0688.2 9 bp overlap
Motif DE_36h DE_36h-TBX2_MA0688.2 9 bp overlap
TBX3 2 datasets
Motif DE_12h DE_12h-TBX3_MA1566.3 9 bp overlap
Motif DE_36h DE_36h-TBX3_MA1566.3 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 232 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif DE_36h DE_36h-TFAP4_MA0691.1 10 bp overlap
Tbx6 2 datasets
Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Tcf12 4 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Motif DE_36h DE_36h-Tcf12_MA0521.3 6 bp overlap
Twist2 4 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
Motif DE_36h DE_36h-Twist2_MA0633.3 6 bp overlap
USF1 3 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 281 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 417 bp overlap
ZBTB18 2 datasets
Motif DE_12h DE_12h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_36h DE_36h-ZBTB18_MA0698.2 11 bp overlap
ZIC1 4 datasets
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
Motif DE_36h DE_36h-ZIC1_MA0696.1 14 bp overlap
ZIC4 4 datasets
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
Motif DE_36h DE_36h-ZIC4_MA0751.2 14 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF416 2 datasets
Motif DE_12h DE_12h-ZNF416_MA1979.2 10 bp overlap
Motif DE_36h DE_36h-ZNF416_MA1979.2 10 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 299 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCFF896CCA 251 bp overlap
ZNF677 1 dataset
Motif DE_36h DE_36h-ZNF677_MA2101.1 12 bp overlap
ZNF680 2 datasets
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_36h DE_36h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 6 datasets
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Motif DE_36h DE_36h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_36h DE_36h-Zic3_MA0697.3 7 bp overlap
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