chr15 : 90,708,607 90,708,838
231 bp 61 TFs 2 linked genes
This 231 bp open chromatin element is linked to CRTC3-AS1 and BLM and is bound by 61 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CRTC3-AS1 8.3 kb Proximal Proximity
BLM 8.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:90,703,607 – 90,713,838
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 176 bp overlap
BRD4 1 dataset
ChIP HEK293T GSE39579.BRD4.HEK293T 172 bp overlap
CRX 1 dataset
ChIP retina_Hu6 GSE137311.CRX.retina_Hu6 231 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF167CZS 231 bp overlap
ChIP GM12878 ENCSR000DZQ.EBF1.GM12878 134 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 115 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D9 GSE129986.ETS1.cardiomyocyte_D9 151 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 210 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 231 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 230 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 216 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 207 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 231 bp overlap
FOXA2 4 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 123 bp overlap
ChIP DE DE-FOXA2-1 231 bp overlap
ChIP DE DE-FOXA2-2 231 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 231 bp overlap
FOXM1 1 dataset
ChIP HEK293 GSE60032.FOXM1.HEK293 161 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 122 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 231 bp overlap
ChIP DE DE-GATA4-2 231 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 231 bp overlap
ChIP foregut GSE117136.GATA4.foregut 231 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 231 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 231 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 231 bp overlap
ChIP DE DE-GATA6-2 231 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 231 bp overlap
ChIP foregut GSE117136.GATA6.foregut 231 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 231 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 231 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 231 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 231 bp overlap
GLIS1 2 datasets
ChIP HEK293 ENCFF299RSE 231 bp overlap
ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 231 bp overlap
HSF1 1 dataset
ChIP NCI-H838 GSE38901.HSF1.NCI-H838 177 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 231 bp overlap
ChIP K-562 ENCSR395HWC.IKZF1.K-562 224 bp overlap
ChIP K562 ENCFF348IBL 231 bp overlap
IKZF2 1 dataset
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 153 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 231 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 227 bp overlap
INSM2 2 datasets
ChIP HEK293 ENCFF008ZWC 231 bp overlap
ChIP HEK293 ENCSR382GSF.INSM2.HEK293 203 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 231 bp overlap
ChIP pancreatic-progenitor_PP2-KDM1A-inh GSE104840.KDM1A.pancreatic-progenitor_PP2-KDM1A-inh 222 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 231 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 187 bp overlap
MAZ 3 datasets
ChIP HEK293 ENCFF994GSG 231 bp overlap
ChIP HEK293 GSE76494.MAZ.HEK293 206 bp overlap
ChIP HEK293 ENCSR290SSQ.MAZ.HEK293 185 bp overlap
MEIS1 1 dataset
ChIP HEK293 ENCFF821TIY 231 bp overlap
MYNN 1 dataset
ChIP HEK293 ENCFF897QZG 231 bp overlap
NEUROD1 6 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 231 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 231 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 231 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 231 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 231 bp overlap
ChIP K-562 ENCSR986CDX.NEUROD1.K-562 115 bp overlap
NFKB1 1 dataset
ChIP HEK293T GSE129618.NFKB1.HEK293T 229 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 207 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 187 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 225 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 162 bp overlap
OTX2 1 dataset
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 231 bp overlap
PATZ1 2 datasets
ChIP HEK293 ENCFF016MNJ 231 bp overlap
ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 231 bp overlap
PDX1 5 datasets
ChIP H9 ERP004206.PDX1.H9 154 bp overlap
ChIP hESC GSE58685.PDX1.hESC 195 bp overlap
ChIP hiPSC GSE125768.PDX1.hiPSC 231 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 231 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 231 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 231 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 204 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 231 bp overlap
RAD21 1 dataset
ChIP HAP1 GSE152721.RAD21.HAP1 216 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 164 bp overlap
ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 186 bp overlap
RBPJ 2 datasets
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 163 bp overlap
ChIP NHEK GSE29498.RBPJ.NHEK 114 bp overlap
RXR 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 231 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 231 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 149 bp overlap
SMARCC1 1 dataset
ChIP TTC-549_Dox GSE71504.SMARCC1.TTC-549_Dox 231 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 213 bp overlap
TSHZ1 1 dataset
ChIP HEK293 ENCFF893BGV 231 bp overlap
TWIST1 4 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 231 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 202 bp overlap
ChIP SHEP-21N_24h GSE80151.TWIST1.SHEP-21N_24h 231 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 231 bp overlap
WT1 1 dataset
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 231 bp overlap
YY1 2 datasets
ChIP Hep-G2_NC GSE120104.YY1.Hep-G2_NC 156 bp overlap
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 225 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 231 bp overlap
ChIP HEK293 ENCFF865LIO 231 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 218 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCFF560VPN 231 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 215 bp overlap
ZEB2 1 dataset
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 231 bp overlap
ZNF18 4 datasets
ChIP HEK293 ENCFF066NGR 143 bp overlap
ChIP HEK293 ENCFF066NGR 90 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 231 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 121 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 231 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 231 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 231 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 156 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 151 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 176 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 187 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCFF854MGB 231 bp overlap
ZNF610 2 datasets
ChIP HEK293 ENCFF778UKJ 231 bp overlap
ChIP HEK293 ENCSR691TXI.ZNF610.HEK293 214 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 179 bp overlap
ZSCAN23 1 dataset
ChIP HEK293 ENCFF127TFV 231 bp overlap
ZXDB 2 datasets
ChIP HEK293 ENCFF835SGA 213 bp overlap
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 231 bp overlap