chr15 : 76,253,843 76,254,335
492 bp 59 TFs 3 linked genes
This 492 bp open chromatin element is linked to ETFA, TMEM266, and NRG4 and is bound by 59 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
ETFA 57.4 kb Distal Multiome
TMEM266 194.1 kb Distal Multiome
NRG4 194.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:76,248,843 – 76,259,335
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
59 transcription factors
Source
Cell type
AFF4 2 datasets
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 127 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 147 bp overlap
AR 1 dataset
ChIP LNCaP_GFP_shFOXA1_Ethanol GSE128883.AR.LNCaP_GFP_shFOXA1_Ethanol 74 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 422 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 158 bp overlap
BRD4 6 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 492 bp overlap
ChIP Kelly_resistant_JQ1 GSE103030.BRD4.Kelly_resistant_JQ1 155 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 289 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 382 bp overlap
ChIP VCaP_Darolutamide GSE148358.BRD4.VCaP_Darolutamide 203 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 123 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 140 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 191 bp overlap
CTCF 1 dataset
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 137 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 246 bp overlap
EGR1 1 dataset
ChIP fibroblast_DOX-CLOB-24h GSE134924.EGR1.fibroblast_DOX-CLOB-24h 96 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 257 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 253 bp overlap
ESR1 3 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 138 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 217 bp overlap
ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 314 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
FLI1 6 datasets
ChIP A-673 GSE99959.FLI1.A-673 281 bp overlap
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 492 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 316 bp overlap
ChIP A-673_D11 GSE129155.FLI1.A-673_D11 325 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 391 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 435 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 423 bp overlap
ChIP DE DE-FOXA2-2 309 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 134 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 454 bp overlap
ChIP DE DE-GATA4-2 492 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 197 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 442 bp overlap
ChIP DE DE-GATA6-2 492 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 377 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 368 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 394 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 418 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 405 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 458 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 344 bp overlap
ChIP foregut GSE117136.GATA6.foregut 254 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 152 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 313 bp overlap
ChIP SK-N-SH ENCFF285GEQ 218 bp overlap
JUN 1 dataset
ChIP DE_D2 S02-DE-d2-JUN-exp1 287 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 112 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 453 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 270 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 181 bp overlap
NANOG 6 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 388 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 195 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 361 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 358 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 282 bp overlap
ChIP hESC GSE18292.NANOG.hESC 93 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 263 bp overlap
NR3C1 1 dataset
ChIP LCL_DEX GSE45638.NR3C1.LCL_DEX 94 bp overlap
NRIP1 1 dataset
ChIP MCF-7 ERP005838.NRIP1.MCF-7 176 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 60 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 158 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 325 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 299 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 379 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 211 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 419 bp overlap
RUNX2 1 dataset
ChIP LNCaP-C4-2B GSE33889.RUNX2.LNCaP-C4-2B 328 bp overlap
SETDB1 3 datasets
ChIP HEK293 ENCFF676PLV 157 bp overlap
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 116 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 116 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 387 bp overlap
SMARCA4 3 datasets
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 223 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 140 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 259 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 262 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 334 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 492 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 264 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 243 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 305 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
STAT3 2 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 51 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 253 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 205 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 312 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 492 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 492 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 245 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZBTB6 1 dataset
ChIP HEK293 GSE76494.ZBTB6.HEK293 189 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 285 bp overlap
ZNF449 1 dataset
Motif DE_12h DE_12h-ZNF449_MA1656.2 10 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
Zfp335 1 dataset
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap