chr1 : 25,642,181 25,642,620
439 bp 85 TFs 0 linked genes
This 439 bp open chromatin element has no linked target genes and is bound by 85 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:25,637,181 – 25,647,620
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AFF1 1 dataset
ChIP SEM_DMSO GSE90762.AFF1.SEM_DMSO 57 bp overlap
AR 3 datasets
ChIP LNCaP_D226N_shFOXA1_Ethanol GSE128883.AR.LNCaP_D226N_shFOXA1_Ethanol 171 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 360 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 65 bp overlap
ARNTL 1 dataset
ChIP U2OS_DMOG GSE85096.ARNTL.U2OS_DMOG 283 bp overlap
ASCL1 1 dataset
Motif DE_24h DE_24h-ASCL1_MA1631.2 9 bp overlap
ASH2L 1 dataset
ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 103 bp overlap
BRD4 12 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 66 bp overlap
ChIP MM1-S GSE45984.BRD4.MM1-S 439 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 439 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 439 bp overlap
ChIP MM1-S_JQ1_150NM GSE49224.BRD4.MM1-S_JQ1_150NM 439 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.BRD4.MM1-S_JQ1_500NM 439 bp overlap
ChIP MM1-S_JQ1_50NM GSE42355.BRD4.MM1-S_JQ1_50NM 439 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 439 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 439 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 192 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 189 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 177 bp overlap
CDK9 4 datasets
ChIP MM1-S_DMSO GSE42161.CDK9.MM1-S_DMSO 439 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.CDK9.MM1-S_JQ1_5000NM 390 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 389 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.CDK9.MM1-S_JQ1_50NM 340 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 55 bp overlap
CREB1 1 dataset
Motif DE_24h DE_24h-CREB1_MA0018.5 8 bp overlap
CREM 1 dataset
Motif DE_24h DE_24h-CREM_MA0609.3 10 bp overlap
CTCF 17 datasets
ChIP AG09319 ENCFF401ZTN 133 bp overlap
ChIP AG10803 ENCFF549AQK 132 bp overlap
ChIP Peyers-patch ENCSR799WDT.CTCF.Peyers-patch 64 bp overlap
ChIP aorta_thoracic ENCSR668BTN.CTCF.aorta_thoracic 98 bp overlap
ChIP esophagus-muscularis-mucosa ENCSR073TPC.CTCF.esophagus-muscularis-mucosa 63 bp overlap
ChIP fibroblast_GINGIVA ENCSR000DPS.CTCF.fibroblast_GINGIVA 95 bp overlap
ChIP fibroblast_SKIN_ABDOMEN ENCSR000DPV.CTCF.fibroblast_SKIN_ABDOMEN 55 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 105 bp overlap
ChIP heart ENCSR232OFD.CTCF.heart 133 bp overlap
ChIP heart_left-ventricle ENCSR718SDR.CTCF.heart_left-ventricle 125 bp overlap
ChIP hepatocyte ERP000395.CTCF.hepatocyte 71 bp overlap
ChIP left ventricle myocardium inferior ENCFF161DPW 259 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 116 bp overlap
ChIP liver ENCFF895ERR 111 bp overlap
ChIP skin ENCSR485VQV.CTCF.skin 161 bp overlap
ChIP suprapubic skin ENCFF266CTJ 246 bp overlap
ChIP tibial-artery ENCSR079YAP.CTCF.tibial-artery 101 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 72 bp overlap
DUXA 1 dataset
Motif DE_24h DE_24h-DUXA_MA0884.2 13 bp overlap
Dux 1 dataset
Motif DE_24h DE_24h-Dux_MA0611.3 11 bp overlap
EBF1 1 dataset
ChIP NALM-6 GSE126300.EBF1.NALM-6 233 bp overlap
EED 1 dataset
ChIP GM12878 ENCFF266FYW 51 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 284 bp overlap
ESR1 5 datasets
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 52 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 52 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 58 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 250 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 249 bp overlap
EZH2 2 datasets
ChIP DND41 ENCSR000ASW.EZH2.DND41 165 bp overlap
ChIP Hep-3B2-1-7 GSE128137.EZH2.Hep-3B2-1-7 77 bp overlap
FIGLA 2 datasets
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
Motif DE_24h DE_24h-FIGLA_MA0820.2 6 bp overlap
FOS::JUN 1 dataset
Motif DE_24h DE_24h-FOSJUN_MA1126.2 10 bp overlap
FOXA1 5 datasets
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 107 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 91 bp overlap
ChIP T-47D_JC4748 GSE126004.FOXA1.T-47D_JC4748 114 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 98 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 92 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE76181.GATA3.Jurkat 72 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 322 bp overlap
GATA6 7 datasets
ChIP DE DE-GATA6-2 424 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 383 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 317 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 326 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 346 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 333 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 426 bp overlap
HMGB1 1 dataset
ChIP IMR-90 GSE98245.HMGB1.IMR-90 238 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF354NRH 201 bp overlap
IRF4 1 dataset
ChIP U266 GSE142493.IRF4.U266 156 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 439 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 409 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 439 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 435 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 296 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 439 bp overlap
KMT2A 3 datasets
ChIP L826 GSE83671.KMT2A.L826 98 bp overlap
ChIP MV4-11 GSE83671.KMT2A.MV4-11 94 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 174 bp overlap
MAF 2 datasets
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 268 bp overlap
Motif DE_24h DE_24h-MAF_MA1520.2 13 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 425 bp overlap
MAFF 1 dataset
Motif DE_24h DE_24h-MAFF_MA0495.4 11 bp overlap
MAFK 2 datasets
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 129 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
MED 1 dataset
ChIP SEM GSE83671.MED.SEM 69 bp overlap
MED1 11 datasets
ChIP MM1-S_BIORU GSE45984.MED1.MM1-S_BIORU 271 bp overlap
ChIP MM1-S_JQ1 GSE42161.MED1.MM1-S_JQ1 418 bp overlap
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 352 bp overlap
ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 376 bp overlap
ChIP MM1-S_JQ1_50NM GSE49224.MED1.MM1-S_JQ1_50NM 417 bp overlap
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 439 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 113 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 102 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 108 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 118 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 64 bp overlap
MYC 1 dataset
ChIP MM1-S_DMSO GSE36354.MYC.MM1-S_DMSO 400 bp overlap
MYOD1 2 datasets
Motif DE_24h DE_24h-MYOD1_MA0499.3 9 bp overlap
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 352 bp overlap
MYOG 1 dataset
ChIP RH30_DMSO GSE85169.MYOG.RH30_DMSO 243 bp overlap
Mafb 1 dataset
Motif DE_24h DE_24h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_24h DE_24h-Mafg_MA0659.4 12 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 379 bp overlap
NR2C1 1 dataset
Motif DE_24h DE_24h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_24h DE_24h-NR2C2_MA1536.2 6 bp overlap
NRL 1 dataset
Motif DE_24h DE_24h-NRL_MA0842.3 12 bp overlap
Nfe2l2 1 dataset
Motif DE_24h DE_24h-Nfe2l2_MA0150.3 11 bp overlap
Nr1H2 1 dataset
Motif DE_24h DE_24h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_24h DE_24h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_24h DE_24h-Nr1h3_MA2337.1 6 bp overlap
PBX1 1 dataset
ChIP RCH-ACV GSE85988.PBX1.RCH-ACV 52 bp overlap
POLR2A 2 datasets
ChIP esophagus muscularis mucosa ENCFF791ZXN 92 bp overlap
ChIP lower leg skin ENCFF058ULB 341 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 439 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 191 bp overlap
ChIP liver ENCFF522JHE 184 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 65 bp overlap
RUNX1 1 dataset
ChIP NALM-6 GSE126300.RUNX1.NALM-6 369 bp overlap
RXRA 1 dataset
ChIP liver ENCFF807CIA 195 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 145 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 439 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 439 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 439 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 439 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 391 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 439 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 439 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 439 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 221 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 231 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15686 GSE132290.SMARCA4.A-549_AG15686 164 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 356 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 233 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 74 bp overlap
SS18 2 datasets
ChIP SYO-1 GSE108025.SS18.SYO-1 439 bp overlap
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 214 bp overlap
TCF12 1 dataset
ChIP GM12878 ENCSR000BGZ.TCF12.GM12878 95 bp overlap
TCF3 2 datasets
ChIP Kasumi-1 GSE43834.TCF3.Kasumi-1 439 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 139 bp overlap
TCF4 1 dataset
Motif DE_24h DE_24h-TCF4_MA0830.3 8 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 97 bp overlap
TERF1 1 dataset
ChIP LCL GSE55053.TERF1.LCL 135 bp overlap
TFAP4::FLI1 2 datasets
Motif DE_24h DE_24h-TFAP4FLI1_MA1967.2 14 bp overlap
Motif DE_24h DE_24h-TFAP4FLI1_MA1967.2 14 bp overlap
ZEB1 2 datasets
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
Motif DE_24h DE_24h-ZEB1_MA0103.4 6 bp overlap
ZNF317 1 dataset
Motif DE_24h DE_24h-ZNF317_MA1593.2 8 bp overlap
ZNF331 1 dataset
Motif DE_24h DE_24h-ZNF331_MA1726.2 10 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 201 bp overlap