chr1 : 222,071,436 – 222,072,094

658 bp 65 TFs 0 linked genes

This 658 bp open chromatin element has no linked target genes and is bound by 65 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

65 transcription factors

AR 3 datasets

ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 148 bp overlap

ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 152 bp overlap

ChIP VCaP GSE148358.AR.VCaP 137 bp overlap

ARNT 1 dataset

ChIP RCC4 GSE85352.ARNT.RCC4 113 bp overlap

BCOR 1 dataset

ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 153 bp overlap

BRD4 2 datasets

ChIP Hs-352-Sk_PAX3-FOXO1-vector GSE83725.BRD4.Hs-352-Sk_PAX3-FOXO1-vector 236 bp overlap

ChIP LPS141 GSE111253.BRD4.LPS141 496 bp overlap

CDX2 1 dataset

ChIP LS180_125 GSE31939.CDX2.LS180_125 132 bp overlap

CREBBP 1 dataset

ChIP LS180_125 GSE39277.CREBBP.LS180_125 81 bp overlap

CTCF 1 dataset

Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap

E2F6 1 dataset

ChIP WA01 ENCSR000BSI.E2F6.WA01 109 bp overlap

ESR1 1 dataset

ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 126 bp overlap

GATA6 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 211 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 194 bp overlap

HNF4A 3 datasets

ChIP liver ENCFF354NRH 260 bp overlap

ChIP liver ENCFF449HPV 80 bp overlap

ChIP liver ERP002306.HNF4A.liver 111 bp overlap

JUND 1 dataset

ChIP liver ENCSR196HGZ.JUND.liver 159 bp overlap

MAF 1 dataset

Motif DE_12h DE_12h-MAF_MA1520.2 13 bp overlap

MAFA 1 dataset

Motif DE_12h DE_12h-MAFA_MA1521.2 13 bp overlap

MAX 5 datasets

ChIP WA01 ENCSR000EUP.MAX.WA01 370 bp overlap

ChIP liver ENCFF092GVW 481 bp overlap

ChIP liver ENCFF584QGB 349 bp overlap

ChIP liver ENCSR521IID.MAX.liver 288 bp overlap

ChIP liver ENCSR847DIT.MAX.liver 113 bp overlap

MED1 1 dataset

ChIP MM1-S_JQ1_500NM GSE42355.MED1.MM1-S_JQ1_500NM 183 bp overlap

MTA2 1 dataset

ChIP RH4 GSE155861.MTA2.RH4 233 bp overlap

NANOG 3 datasets

ChIP HUES-8 GSE109524.NANOG.HUES-8 486 bp overlap

ChIP WA01 ERP004238.NANOG.WA01 288 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 550 bp overlap

NEUROD1 5 datasets

ChIP D283-Med GSE92582.NEUROD1.D283-Med 640 bp overlap

ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 569 bp overlap

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 448 bp overlap

ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 364 bp overlap

ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 479 bp overlap

NFIA 1 dataset

Motif DE_12h DE_12h-NFIA_MA0670.2 6 bp overlap

NFIC 1 dataset

Motif DE_12h DE_12h-NFIC_MA0161.3 7 bp overlap

NFIX 1 dataset

Motif DE_12h DE_12h-NFIX_MA0671.2 6 bp overlap

NIPBL 1 dataset

ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 432 bp overlap

NR2F2 2 datasets

ChIP liver ENCFF565JGD 297 bp overlap

ChIP liver ENCSR168SMX.NR2F2.liver 139 bp overlap

OLIG2 2 datasets

ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 134 bp overlap

ChIP brain-prefrontal-cortex_2017039 GSE129039.OLIG2.brain-prefrontal-cortex_2017039 254 bp overlap

ONECUT1 3 datasets

Motif DE_12h DE_12h-ONECUT1_MA0679.3 9 bp overlap

ChIP liver ERP002306.ONECUT1.liver 133 bp overlap

ChIP liver ERP002306.ONECUT1.liver 211 bp overlap

ONECUT2 1 dataset

Motif DE_12h DE_12h-ONECUT2_MA0756.3 8 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 223 bp overlap

PAX4 1 dataset

Motif DE_12h DE_12h-PAX4_MA0068.2 8 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1 1 dataset

Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU3F1 1 dataset

Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap

POU3F2 1 dataset

Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap

POU3F3 1 dataset

Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap

POU3F4 1 dataset

Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap

POU5F1 1 dataset

ChIP HUES-8 GSE109524.POU5F1.HUES-8 489 bp overlap

POU5F1B 1 dataset

Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap

Pou5f1::Sox2 1 dataset

Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap

Pparg::Rxra 1 dataset

Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap

RAD21 3 datasets

ChIP HAP1 GSE152721.RAD21.HAP1 261 bp overlap

ChIP liver ENCFF485PAC 305 bp overlap

ChIP liver ENCFF522JHE 217 bp overlap

REST 1 dataset

ChIP liver ENCSR867WPH.REST.liver 128 bp overlap

RXRA 2 datasets

ChIP liver ENCFF077DAP 161 bp overlap

ChIP liver ENCFF807CIA 112 bp overlap

SMARCA2 1 dataset

ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 224 bp overlap

SMARCA4 5 datasets

ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 431 bp overlap

ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 167 bp overlap

ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 431 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 561 bp overlap

ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 520 bp overlap

SMARCB1 2 datasets

ChIP hiPSC GSE124903.SMARCB1.hiPSC 589 bp overlap

ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 345 bp overlap

SMARCC1 2 datasets

ChIP hiPSC GSE124903.SMARCC1.hiPSC 340 bp overlap

ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 524 bp overlap

SOX2 1 dataset

ChIP hESC GSE18292.SOX2.hESC 95 bp overlap

SOX8 1 dataset

ChIP RH4 GSE116344.SOX8.RH4 437 bp overlap

SP1 2 datasets

ChIP liver ENCFF597LFJ 136 bp overlap

ChIP liver ENCFF769YSM 112 bp overlap

THRB 1 dataset

Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap

TP53 1 dataset

ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 272 bp overlap

USF1 2 datasets

ChIP H1 ENCFF090WVU 181 bp overlap

ChIP WA01 ENCSR000BIU.USF1.WA01 198 bp overlap

USF2 1 dataset

ChIP WTC11 ENCFF139JAW 242 bp overlap

YY1 4 datasets

ChIP WA01 ENCSR000BKD.YY1.WA01 164 bp overlap

ChIP liver ENCFF400MBC 348 bp overlap

ChIP liver ENCFF400MBC 558 bp overlap

ChIP liver ENCSR994YLZ.YY1.liver 222 bp overlap

ZBTB33 1 dataset

ChIP liver ENCSR516HUP.ZBTB33.liver 200 bp overlap

ZNF317 1 dataset

ChIP HEK293 GSE76494.ZNF317.HEK293 137 bp overlap

ZNF462 1 dataset

ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 164 bp overlap

ZNF547 1 dataset

Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap

ZNF660 1 dataset

ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 190 bp overlap

ZNF736 1 dataset

ChIP HEK293T GSE78099.ZNF736.HEK293T 186 bp overlap

ZNF778 1 dataset

ChIP HEK293T GSE78099.ZNF778.HEK293T 112 bp overlap

ZSCAN4 1 dataset

Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap