chr13 : 109,400,776 109,400,986
210 bp 47 TFs 0 linked genes
This 210 bp open chromatin element has no linked target genes and is bound by 47 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:109,395,776 – 109,405,986
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
47 transcription factors
Source
Cell type
ATRX 2 datasets
ChIP metastatic-neuroblastoma_CHLA90 GSE100148.ATRX.metastatic-neuroblastoma_CHLA90 210 bp overlap
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 210 bp overlap
BAF155 1 dataset
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 210 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 210 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap
BRD2 2 datasets
ChIP MV4-11_IBET151_500nM GSE120715.BRD2.MV4-11_IBET151_500nM 140 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 128 bp overlap
BRD3 5 datasets
ChIP MV4-11_DMSO GSE120715.BRD3.MV4-11_DMSO 124 bp overlap
ChIP MV4-11_IBET151_500nM GSE120715.BRD3.MV4-11_IBET151_500nM 81 bp overlap
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 112 bp overlap
ChIP THP-1_DMSO-PMA GSE138084.BRD3.THP-1_DMSO-PMA 120 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD3.THP-1_iBET-BD2 141 bp overlap
BRD4 12 datasets
ChIP BE2C GSE80151.BRD4.BE2C 132 bp overlap
ChIP MOLM-14_CA25 GSE65138.BRD4.MOLM-14_CA25 210 bp overlap
ChIP MOLM-14_IBET GSE65138.BRD4.MOLM-14_IBET 63 bp overlap
ChIP MV4-11-B_DMSO GSE101821.BRD4.MV4-11-B_DMSO 82 bp overlap
ChIP MV4-11_DMSO GSE120715.BRD4.MV4-11_DMSO 123 bp overlap
ChIP OCI-AML3 GSE104745.BRD4.OCI-AML3 163 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 132 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 132 bp overlap
ChIP THP-1_DMSO GSE138084.BRD4.THP-1_DMSO 196 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 139 bp overlap
ChIP THP-1_iBET-BD2-PMA GSE138084.BRD4.THP-1_iBET-BD2-PMA 131 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 139 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 100 bp overlap
CDK8 1 dataset
ChIP MOLM-14 GSE65138.CDK8.MOLM-14 69 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 189 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 210 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 210 bp overlap
ERG 2 datasets
ChIP VCaP GSE49091.ERG.VCaP 161 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 175 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 209 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.FOXA2.BJ1-hTERT_FOXA2_GATA4_Coexp 210 bp overlap
GATA2 5 datasets
ChIP ME-1_CBFB-MYH11-KD GSE117138.GATA2.ME-1_CBFB-MYH11-KD 174 bp overlap
ChIP SH-SY5Y ENCFF485YIB 210 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 210 bp overlap
ChIP SK-N-SH ENCFF764OZD 210 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 210 bp overlap
GATA3 5 datasets
ChIP Kelly GSE65664.GATA3.Kelly 159 bp overlap
ChIP SH-SY5Y ENCFF475HYF 210 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 187 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 129 bp overlap
ChIP SK-N-SH ENCFF040SSB 210 bp overlap
GATA4 8 datasets
ChIP A-549 GSE85002.GATA4.A-549 210 bp overlap
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 164 bp overlap
ChIP DE DE-GATA4-1 210 bp overlap
ChIP DE DE-GATA4-2 210 bp overlap
ChIP ESO-26 GSE132813.GATA4.ESO-26 188 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 210 bp overlap
ChIP YCC-3 GSE51705.GATA4.YCC-3 187 bp overlap
ChIP foregut GSE117136.GATA4.foregut 210 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 210 bp overlap
ChIP AGS GSE51936.GATA6.AGS 79 bp overlap
ChIP DE DE-GATA6-1 210 bp overlap
ChIP DE DE-GATA6-2 210 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 210 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 210 bp overlap
ChIP HUG1N GSE51936.GATA6.HUG1N 153 bp overlap
ChIP PATU8988 GSE47535.GATA6.PATU8988 210 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 210 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 210 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 210 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 210 bp overlap
ChIP SK-N-SH ENCFF285GEQ 193 bp overlap
JUND 1 dataset
ChIP liver ENCSR837GTK.JUND.liver 203 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 169 bp overlap
MAML3 1 dataset
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 187 bp overlap
MAX 3 datasets
ChIP liver ENCFF584QGB 210 bp overlap
ChIP liver ENCSR521IID.MAX.liver 159 bp overlap
ChIP liver ENCSR847DIT.MAX.liver 128 bp overlap
MED1 1 dataset
ChIP MOLM-13 GSE154985.MED1.MOLM-13 148 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 129 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 143 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 201 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 210 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 136 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 210 bp overlap
POLR2A 4 datasets
ChIP Peyer's patch ENCFF767HVN 210 bp overlap
ChIP right lobe of liver ENCFF026NCK 120 bp overlap
ChIP stomach ENCFF607ZPU 82 bp overlap
ChIP stomach ENCFF820WZN 200 bp overlap
RAD21 3 datasets
ChIP SK-N-SH ENCFF747MAS 180 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 195 bp overlap
ChIP liver ENCFF522JHE 210 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 210 bp overlap
REST 3 datasets
ChIP liver ENCFF240FWT 210 bp overlap
ChIP liver ENCSR867WPH.REST.liver 192 bp overlap
ChIP liver ENCSR893QWP.REST.liver 210 bp overlap
RXRA 1 dataset
ChIP liver ENCFF077DAP 210 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 210 bp overlap
SMARCA4 1 dataset
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 210 bp overlap
SNAI2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 173 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 200 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 210 bp overlap
SP1 1 dataset
ChIP liver ENCFF769YSM 210 bp overlap
TAF1 1 dataset
ChIP liver ENCFF972HXJ 210 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 70 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 55 bp overlap
TSHZ2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 195 bp overlap
YY1 2 datasets
ChIP liver ENCFF400MBC 210 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 185 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 210 bp overlap