chr13 : 86,050,984 86,051,702
718 bp 80 TFs 0 linked genes
This 718 bp open chromatin element has no linked target genes and is bound by 80 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:86,045,984 – 86,056,702
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
80 transcription factors
Source
Cell type
AR 2 datasets
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 58 bp overlap
ChIP breast_tumor_Male_18 GSE104399.AR.breast_tumor_Male_18 188 bp overlap
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 209 bp overlap
ASCL1 2 datasets
ChIP NCI-H2107 GSE69394.ASCL1.NCI-H2107 190 bp overlap
ChIP SCLC_ASCLP GSE61197.ASCL1.SCLC_ASCLP 196 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 545 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 599 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
BAP1 2 datasets
ChIP NCI-H1963_shASXL3 GSE145028.BAP1.NCI-H1963_shASXL3 440 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 718 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 221 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 360 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 718 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 566 bp overlap
CTCF 1 dataset
ChIP GSC23 GSE139416.CTCF.GSC23 174 bp overlap
DPF2 3 datasets
ChIP BIN-67_ctrl GSE117734.DPF2.BIN-67_ctrl 497 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 426 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 106 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCFF364ZWT 417 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 454 bp overlap
ESR1 35 datasets
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 152 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 241 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 276 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 423 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 412 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 212 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 227 bp overlap
ChIP Ishikawa_ETV4-OE GSE129803.ESR1.Ishikawa_ETV4-OE 250 bp overlap
ChIP Ishikawa_siETV4-72h GSE129803.ESR1.Ishikawa_siETV4-72h 266 bp overlap
ChIP MCF-7_G6274 GSE117941.ESR1.MCF-7_G6274 52 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 64 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 284 bp overlap
ChIP MCF-7_TamR GSE128445.ESR1.MCF-7_TamR 85 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 50 bp overlap
ChIP MCF-7_estradiol_4h GSE99626.ESR1.MCF-7_estradiol_4h 280 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 214 bp overlap
ChIP MCF-7_jc5850 GSE126004.ESR1.MCF-7_jc5850 55 bp overlap
ChIP MCF-7_jc5852 GSE126004.ESR1.MCF-7_jc5852 223 bp overlap
ChIP MCF-7_jc5853 GSE126004.ESR1.MCF-7_jc5853 174 bp overlap
ChIP MCF-7_jc5854 GSE126004.ESR1.MCF-7_jc5854 186 bp overlap
ChIP MCF-7_jc5855 GSE126004.ESR1.MCF-7_jc5855 294 bp overlap
ChIP MCF-7_jc5856 GSE126004.ESR1.MCF-7_jc5856 162 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 67 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 107 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 86 bp overlap
ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 207 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 157 bp overlap
ChIP breast_tumor_Male_11 GSE104399.ESR1.breast_tumor_Male_11 58 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 342 bp overlap
ChIP breast_tumor_Male_18 GSE104399.ESR1.breast_tumor_Male_18 66 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 221 bp overlap
ChIP breast_tumor_Male_19 GSE104399.ESR1.breast_tumor_Male_19 74 bp overlap
ChIP breast_tumor_Male_21 GSE104399.ESR1.breast_tumor_Male_21 348 bp overlap
ChIP breast_tumor_Male_26 GSE104399.ESR1.breast_tumor_Male_26 177 bp overlap
ChIP primary-breast-cancer_B2_DSG GSE114737.ESR1.primary-breast-cancer_B2_DSG 113 bp overlap
ESR1_Y537C 1 dataset
ChIP SUM44PE__ESR1_mutant_LTED GSE100074.ESR1_Y537C.SUM44PE__ESR1_mutant_LTED 398 bp overlap
FOS 2 datasets
ChIP MCF-7 ENCFF282FWZ 52 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 119 bp overlap
FOSL2 1 dataset
ChIP MCF-7 ENCFF716UWP 88 bp overlap
FOXA1 18 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 198 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 206 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 67 bp overlap
ChIP MCF-7 GSE72249.FOXA1.MCF-7 78 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 78 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 106 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 87 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 138 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 90 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 193 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 212 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 82 bp overlap
ChIP ZR-75-1_vehicle_ab1 GSE112969.FOXA1.ZR-75-1_vehicle_ab1 129 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 120 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 92 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 92 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 103 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 87 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 162 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 179 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 99 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 140 bp overlap
FOXM1 1 dataset
ChIP Ishikawa ENCFF578VDD 446 bp overlap
GATA3 1 dataset
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 515 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 280 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 322 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 473 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 291 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 315 bp overlap
GLIS3 1 dataset
Motif DE_12h DE_12h-GLIS3_MA0737.1 14 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 193 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 53 bp overlap
IRF2 1 dataset
Motif DE_12h DE_12h-IRF2_MA0051.2 16 bp overlap
IRF4 2 datasets
ChIP BC-3 GSE132777.IRF4.BC-3 61 bp overlap
Motif DE_12h DE_12h-IRF4_MA1419.2 14 bp overlap
IRF7 1 dataset
Motif DE_12h DE_12h-IRF7_MA0772.2 13 bp overlap
IRF8 1 dataset
Motif DE_12h DE_12h-IRF8_MA0652.2 13 bp overlap
IRF9 1 dataset
Motif DE_12h DE_12h-IRF9_MA0653.1 15 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUND 1 dataset
ChIP HeLa-S3 ENCFF642OHL 77 bp overlap
KDM5B 1 dataset
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 161 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 331 bp overlap
KLF5 1 dataset
ChIP GP5D GSE51234.KLF5.GP5D 307 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 538 bp overlap
MAX 2 datasets
ChIP Ishikawa ENCFF064TDQ 461 bp overlap
ChIP Ishikawa ENCSR000BTY.MAX.Ishikawa 112 bp overlap
MSC 1 dataset
Motif DE_12h DE_12h-MSC_MA0665.1 10 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 1 dataset
ChIP WA01 ERP004238.NANOG.WA01 218 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFIB 3 datasets
ChIP MCF-7 ENCFF925CGH 181 bp overlap
ChIP MCF-7 ENCSR582ZOA.NFIB.MCF-7 144 bp overlap
ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 135 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 544 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 139 bp overlap
NR1H2 1 dataset
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 68 bp overlap
NR3C1 2 datasets
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 276 bp overlap
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 462 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PGR 3 datasets
ChIP AB32 GSE31129.PGR.AB32 51 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 75 bp overlap
ChIP breast_tumor_Male_26 GSE104399.PGR.breast_tumor_Male_26 130 bp overlap
RAD21 1 dataset
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 430 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 228 bp overlap
RUNX1T1 1 dataset
ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 156 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 258 bp overlap
SMAD2 1 dataset
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 345 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 69 bp overlap
ChIP MCF-7 GSE123284.SMARCA4.MCF-7 130 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA4.NPC_R1159Q 183 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 170 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 116 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 95 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 332 bp overlap
STAT3 1 dataset
ChIP BT-474 GSE152203.STAT3.BT-474 75 bp overlap
TAF1 1 dataset
ChIP Ishikawa ENCSR000BTO.TAF1.Ishikawa 213 bp overlap
TCF12 2 datasets
ChIP Ishikawa ENCFF467DDW 471 bp overlap
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 373 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 173 bp overlap
TWIST1 2 datasets
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 166 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 125 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Wt1 1 dataset
Motif DE_12h DE_12h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP Ishikawa ENCFF505XQX 146 bp overlap
ZFP14 1 dataset
Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF454 1 dataset
Motif DE_12h DE_12h-ZNF454_MA1712.2 17 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 277 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap